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ACD37_186

Alias: ACD37_81307.6290.8

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD37_186_1

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3..1433
DNA (1431bp) protein (477aa)
DNA methylase N-4/N-6 domain-containing protein
DNA methylase N-4/N-6 domain-containing protein
DNA methylase N-4/N-6 domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QYI9_CHLT3 (db=UNIREF evalue=1.0e-169 bit_score=600.0 identity=59.16 coverage=99.1614255765199)
coiled-coil (db=Coil db_id=coil from=125 to=146 evalue=NA)
ACD37_186_2
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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1437..2222
DNA (786bp) protein (262aa)
type II restriction endonuclease TdeIII
RE_MjaII (db=HMMPfam db_id=PF09520 from=1 to=239 evalue=1.5e-58 interpro_id=IPR019045 interpro_description=Restriction endonuclease, type II, MjaII GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: Type II site-specific deoxyribonuclease activity (GO:0009036), Biological Process: DNA restriction-modification system (GO:0009307))
type II restriction endonuclease TdeIII Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
type II restriction endonuclease TdeIII alias=ACD37_81307.6290.8G0002,ACD37_81307.6290.8_2,ACD37_C00186G00002 id=42145 tax=ACD37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae organism_group=OP11 organism_desc=OP11
ACD37_186_3
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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2226..2468
DNA (243bp) protein (81aa)
2226..2468 + (rbs_motif=TAA rbs_spacer=3bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD37_186_4
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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2936..3199
DNA (264bp) protein (88aa)
seg (db=Seg db_id=seg from=17 to=34)
seg 17..34 Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD37_186_5
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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3211..3540
DNA (330bp) protein (110aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=10 to=87 evalue=3.8e-16 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=16 to=82 evalue=7.9e-15)
HTH_3 (db=HMMPfam db_id=PF01381 from=20 to=72 evalue=6.5e-14 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00530 from=19 to=74 evalue=9.1e-13 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD37_186_6
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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3550..4482
DNA (933bp) protein (311aa)
hypothetical protein
RNADNAPOLMS (db=FPrintScan db_id=PR00866 from=97 to=115 evalue=2.0e-25 interpro_id=IPR000123 interpro_description=RNA-directed DNA polymerase (reverse transcriptase), msDNA GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: RNA-directed DNA polymerase activity (GO:0003964), Biological Process: RNA-dependent DNA replication (GO:0006278))
RNADNAPOLMS (db=FPrintScan db_id=PR00866 from=144 to=157 evalue=2.0e-25 interpro_id=IPR000123 interpro_description=RNA-directed DNA polymerase (reverse transcriptase), msDNA GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: RNA-directed DNA polymerase activity (GO:0003964), Biological Process: RNA-dependent DNA replication (GO:0006278))
RNADNAPOLMS (db=FPrintScan db_id=PR00866 from=162 to=175 evalue=2.0e-25 interpro_id=IPR000123 interpro_description=RNA-directed DNA polymerase (reverse transcriptase), msDNA GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: RNA-directed DNA polymerase activity (GO:0003964), Biological Process: RNA-dependent DNA replication (GO:0006278))
ACD37_186_7

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4515..5183
DNA (669bp) protein (223aa)
Putative uncharacterized protein n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BP53_9RICK (db=UNIREF evalue=6.0e-24 bit_score=114.0 identity=33.18 coverage=92.8251121076233)
hypothetical protein (db=KEGG evalue=3.0e-15 bit_score=85.1 identity=26.16 coverage=93.7219730941704)
Uncharacterized protein {ECO:0000313|EMBL:EKD85712.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD37_186_8
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(5530..6324)
DNA (795bp) protein (265aa)
hypothetical protein
seg (db=Seg db_id=seg from=234 to=248)
seg (db=Seg db_id=seg from=72 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=225 to=247)
Displaying 8 items

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