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ACD38_4

Alias: ACD38_35112.16629.11

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD38_4_1
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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1..255
DNA (255bp) protein (85aa)
seg (db=Seg db_id=seg from=4 to=29)
Cyt-b5 (db=HMMPfam db_id=PF00173 from=29 to=83 evalue=1.7e-07 interpro_id=IPR001199 interpro_description=Cytochrome b5 GO=Molecular Function: heme binding (GO:0020037))
Cytochrome b5-like heme/steroid binding domain (db=superfamily db_id=SSF55856 from=15 to=84 evalue=4.5e-07 interpro_id=IPR001199 interpro_description=Cytochrome b5 GO=Molecular Function: heme binding (GO:0020037))
Voltage gated chloride channel domain-containing protein {ECO:0000313|EMBL:KKR16529.1}; TaxID=1618423 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2
No CxxCH Jill Banfield (11/15/12)
check for cty b5 domain Jill Banfield (11/15/12)
ACD38_4_2
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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comp(252..1661)
DNA (1410bp) protein (470aa)
histidine kinase
transmembrane_regions (db=TMHMM db_id=tmhmm from=172 to=191)
seg (db=Seg db_id=seg from=177 to=192)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
ACD38_4_3
R_OP11_Curtissbacteria_40_16, Curtissbacteria, Microgenomates, Bacteria

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comp(1628..2320)
DNA (693bp) protein (231aa)
winged helix family two component transcriptional regulator
seg (db=Seg db_id=seg from=57 to=66)
no description (db=HMMSmart db_id=SM00448 from=1 to=113 evalue=1.8e-37 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CheY-like (db=superfamily db_id=SSF52172 from=1 to=189 evalue=9.0e-37 interpro_id=IPR011006 interpro_description=CheY-like)
ACD38_4_4
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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comp(2336..2800)
DNA (465bp) protein (155aa)
seg (db=Seg db_id=seg from=41 to=59)
seg (db=Seg db_id=seg from=64 to=95)
seg (db=Seg db_id=seg from=116 to=136)
Uncharacterized protein {ECO:0000313|EMBL:KKR16532.1}; TaxID=1618423 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_39_33.;"
ACD38_4_5
R_OP11_Curtissbacteria_40_16, Curtissbacteria, Microgenomates, Bacteria

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2937..3080
DNA (144bp) protein (48aa)
2937..3080 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_OP11_Curtissbacteria_40_16_curated
ACD38_4_6
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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comp(3060..3689)
DNA (630bp) protein (210aa)
HNH endonuclease
HNH endonuclease n=1 Tax=Mycobacterium gilvum PYR-GCK RepID=A4T7P6_MYCGI (db=UNIREF evalue=6.0e-12 bit_score=73.9 identity=35.48 coverage=54.7619047619048)
HNH (db=HMMPfam db_id=PF01844 from=142 to=186 evalue=3.2e-07 interpro_id=IPR002711 interpro_description=HNH endonuclease GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: endonuclease activity (GO:0004519))
HNH endonuclease {ECO:0000313|EMBL:KKR16533.1}; TaxID=1618423 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_39_33.;"
ACD38_4_7
GWF2_OP11_38_7, Daviesbacteria, Microgenomates, Bacteria

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comp(4301..4717)
DNA (417bp) protein (139aa)
seg (db=Seg db_id=seg from=8 to=20)
Uncharacterized protein {ECO:0000313|EMBL:KKQ84832.1}; TaxID=1618433 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWF2_38_7.;"
ACD38_4_8
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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4846..5382
DNA (537bp) protein (179aa)
RNA polymerase, sigma-24 subunit, ecf subfamily
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=18 to=175 evalue=1.9e-48 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=2 to=111 evalue=1.0e-24 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=7 to=91 evalue=2.3e-21)
ACD38_4_9
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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5384..6025
DNA (642bp) protein (214aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=63)
seg (db=Seg db_id=seg from=3 to=14)
seg (db=Seg db_id=seg from=107 to=119)
seg (db=Seg db_id=seg from=193 to=213)
ACD38_4_10
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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6031..7200
DNA (1170bp) protein (390aa)
major facilitator superfamily protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=129 to=151)
transmembrane_regions (db=TMHMM db_id=tmhmm from=156 to=178)
transmembrane_regions (db=TMHMM db_id=tmhmm from=201 to=223)
ACD38_4_11
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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7235..7414
DNA (180bp) protein (60aa)
7235..7414 + (rbs_motif=TAAT rbs_spacer=7bp)
Uncharacterized protein {ECO:0000313|EMBL:KKR16538.1}; TaxID=1618423 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_39_33.;"
ACD38_4_12
R_OP11_Curtissbacteria_40_16, Curtissbacteria, Microgenomates, Bacteria

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7420..7851
DNA (432bp) protein (144aa)
ASP_PROTEASE (db=PatternScan db_id=PS00141 from=48 to=59 evalue=0.0 interpro_id=IPR001969 interpro_description=Peptidase aspartic, active site GO=Molecular Function: aspartic-type endopeptidase activity (GO:0004190), Biological Process: proteolysis (GO:0006508))
RVP (db=HMMPfam db_id=PF00077 from=26 to=121 evalue=2.0e-08 interpro_id=IPR018061 interpro_description=Peptidase A2A, retrovirus RVP subgroup)
Acid proteases (db=superfamily db_id=SSF50630 from=21 to=132 evalue=9.6e-08 interpro_id=IPR021109 interpro_description=Peptidase aspartic)
ASP_PROT_RETROV (db=ProfileScan db_id=PS50175 from=46 to=122 evalue=11.482 interpro_id=IPR001995 interpro_description=Peptidase A2A, retrovirus, catalytic GO=Molecular Function: aspartic-type endopeptidase activity (GO:0004190), Biological Process: proteolysis (GO:0006508))
ACD38_4_13
GWF2_OP11_38_7, Daviesbacteria, Microgenomates, Bacteria

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comp(7938..8573)
DNA (636bp) protein (212aa)
hypothetical protein
seg (db=Seg db_id=seg from=198 to=211)
seg (db=Seg db_id=seg from=177 to=186)
seg (db=Seg db_id=seg from=7 to=18)
ACD38_4_14
R_OP11_Curtissbacteria_40_16, Curtissbacteria, Microgenomates, Bacteria

Not on your lists

8694..8942
DNA (249bp) protein (83aa)
8694..8942 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_OP11_Curtissbacteria_40_16_curated
ACD38_4_15
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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comp(8950..9651)
DNA (702bp) protein (234aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
GART (db=PatternScan db_id=PS00373 from=88 to=111 evalue=0.0 interpro_id=IPR001555 interpro_description=Phosphoribosylglycinamide formyltransferase, active site GO=Molecular Function: methyltransferase activity (GO:0008168))
Formyltransferase (db=superfamily db_id=SSF53328 from=4 to=162 evalue=2.2e-46 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
no description (db=Gene3D db_id=G3DSA:3.40.50.170 from=1 to=161 evalue=5.6e-43 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
ACD38_4_16

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comp(9777..10304)
DNA (528bp) protein (176aa)
peptide deformylase (EC:3.5.1.88)
seg (db=Seg db_id=seg from=158 to=170)
Pep_deformylase (db=HMMPfam db_id=PF01327 from=2 to=152 evalue=3.9e-42 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
Peptide deformylase (db=superfamily db_id=SSF56420 from=1 to=169 evalue=5.2e-42 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
ACD38_4_17
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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comp(10324..10608)
DNA (285bp) protein (95aa)
Putative uncharacterized protein n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVC1_9BACT (db=UNIREF evalue=7.0e-13 bit_score=75.9 identity=49.38 coverage=84.2105263157895)
Uncharacterized protein {ECO:0000313|EMBL:KKR16543.1}; TaxID=1618423 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_39_33.;"
hypothetical protein
ACD38_4_18
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(10605..11603)
DNA (999bp) protein (333aa)
seg (db=Seg db_id=seg from=203 to=212)
seg (db=Seg db_id=seg from=64 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=114)
ACD38_4_19

Not on your lists

11819..12016
DNA (198bp) protein (66aa)
11819..12016 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD85018.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD38_4_20

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12485..12643
DNA (159bp) protein (53aa)
12485..12643 + (rbs_motif=TAAT rbs_spacer=8bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD85019.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD38_4_21
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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comp(12759..13181)
DNA (423bp) protein (141aa)
PIN domain-like (db=superfamily db_id=SSF88723 from=1 to=133 evalue=5.5e-16)
PIN (db=HMMPfam db_id=PF01850 from=5 to=120 evalue=4.5e-06 interpro_id=IPR002716 interpro_description=PilT protein, N-terminal)
Uncharacterized protein {ECO:0000313|EMBL:KKR16545.1}; TaxID=1618423 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_39_33.;"
ACD38_4_22
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(13565..14953)
DNA (1389bp) protein (463aa)
seg (db=Seg db_id=seg from=338 to=347)
Uncharacterized protein {ECO:0000313|EMBL:KKR16547.1}; TaxID=1618423 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_39_33.;"
ACD38_4_23
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

15106..15312
DNA (207bp) protein (69aa)
15106..15312 + (rbs_motif=TAAT rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:KKR16548.1}; TaxID=1618423 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_39_33.;"
ACD38_4_24
R_OP11_Curtissbacteria_40_16, Curtissbacteria, Microgenomates, Bacteria

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15341..15610
DNA (270bp) protein (90aa)
TTHA1013-like (db=superfamily db_id=SSF143100 from=11 to=70 evalue=2.5e-11)
UPF0150 (db=HMMPfam db_id=PF03681 from=14 to=57 evalue=3.1e-10 interpro_id=IPR005357 interpro_description=Uncharacterised protein family UPF0150)
TTHA1013-like Tax=RIFCSPHIGHO2_02_FULL_OP11_Curtissbacteria_40_16_curated
ACD38_4_25
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

15607..15828
DNA (222bp) protein (74aa)
hypothetical protein
YcfA/nrd intein domain (db=superfamily db_id=SSF54786 from=2 to=72 evalue=8.6e-17 interpro_id=IPR015146 interpro_description=Ribonucleotide reductase, stirrup)
YcfA (db=HMMPfam db_id=PF07927 from=8 to=64 evalue=2.3e-16 interpro_id=IPR012933 interpro_description=YcfA-like)
no description (db=Gene3D db_id=G3DSA:3.30.920.30 from=2 to=72 evalue=3.6e-12)
ACD38_4_26
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

15834..16328
DNA (495bp) protein (165aa)
seg (db=Seg db_id=seg from=96 to=107)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
transmembrane_regions (db=TMHMM db_id=tmhmm from=140 to=162)
transmembrane_regions (db=TMHMM db_id=tmhmm from=111 to=128)
ACD38_4_27
R_OP11_Curtissbacteria_40_16, Curtissbacteria, Microgenomates, Bacteria

Not on your lists

16372..16665
DNA (294bp) protein (98aa)
rod shape-determining protein MreB
MreB_Mbl (db=HMMPfam db_id=PF06723 from=11 to=96 evalue=4.1e-38 interpro_id=IPR004753 interpro_description=Cell shape determining protein MreB/Mrl GO=Biological Process: cell morphogenesis (GO:0000902))
no description (db=Gene3D db_id=G3DSA:3.30.420.40 from=8 to=97 evalue=5.6e-30)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=8 to=96 evalue=6.5e-21)
Displaying 27 items

View Taxonomy