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ACD38_15

Alias: ACD38_60217.26971.11

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD38_15_1
R_OP11_Curtissbacteria_40_16, Curtissbacteria, Microgenomates, Bacteria

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470..634
DNA (165bp) protein (55aa)
470..634 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_OP11_Curtissbacteria_40_16_curated
ACD38_15_2
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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comp(639..806)
DNA (168bp) protein (56aa)
639..806 - (rbs_motif=TAA rbs_spacer=6bp)
Uncharacterized protein {ECO:0000313|EMBL:KKR17508.1}; TaxID=1618423 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_39_33.;"
ACD38_15_3

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1147..1692
DNA (546bp) protein (182aa)
seg (db=Seg db_id=seg from=16 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Uncharacterized protein {ECO:0000313|EMBL:EKD84869.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD38_15_4
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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comp(1960..6057)
DNA (4098bp) protein (1366aa)
hypothetical protein
Peptidase S8 and S53 subtilisin kexin sedolisin n=2 Tax=Streptomyces RepID=D1WTT1_9ACTO (db=UNIREF evalue=7.0e-57 bit_score=227.0 identity=35.59 coverage=31.5519765739385)
seg (db=Seg db_id=seg from=282 to=292)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
ACD38_15_5
R_OP11_Curtissbacteria_40_16, Curtissbacteria, Microgenomates, Bacteria

Not on your lists

6164..6394
DNA (231bp) protein (77aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions 4..26 Tax=RIFCSPHIGHO2_02_FULL_OP11_Curtissbacteria_40_16_curated
ACD38_15_6
R_OP11_Curtissbacteria_40_16, Curtissbacteria, Microgenomates, Bacteria

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6511..6873
DNA (363bp) protein (121aa)
6511..6873 + (rbs_motif=TAA rbs_spacer=4bp)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_OP11_Curtissbacteria_40_16_curated
ACD38_15_7
R_OP11_Curtissbacteria_40_16, Curtissbacteria, Microgenomates, Bacteria

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6935..7096
DNA (162bp) protein (54aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions 20..42 Tax=RIFCSPHIGHO2_02_FULL_OP11_Curtissbacteria_40_16_curated
ACD38_15_8
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

7606..7857
DNA (252bp) protein (84aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=57)
TM2 (db=HMMPfam db_id=PF05154 from=34 to=67 evalue=5.5e-11 interpro_id=IPR007829 interpro_description=TM2)
TM2 domain-containing protein {ECO:0000313|EMBL:KKR17502.1}; TaxID=1618423 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_39_33.;"
ACD38_15_9
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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8184..8513
DNA (330bp) protein (110aa)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=109 evalue=7.6e-06)
Uncharacterized protein {ECO:0000313|EMBL:KKR17501.1}; TaxID=1618423 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_39_33.;"
ACD38_15_10
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

8616..8813
DNA (198bp) protein (66aa)
8616..8813 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:KKR17500.1}; TaxID=1618423 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA2_39_33.;"
ACD38_15_11
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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comp(8834..10174)
DNA (1341bp) protein (447aa)
membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
seg (db=Seg db_id=seg from=303 to=314)
transmembrane_regions (db=TMHMM db_id=tmhmm from=423 to=445)
ACD38_15_12
GWC2_OP11_40_12, Daviesbacteria, Microgenomates, Bacteria

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comp(10235..10537)
DNA (303bp) protein (101aa)
10235..10537 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:KKR41708.1}; TaxID=1618431 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWC2_40_12.;"
ACD38_15_13
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

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comp(10824..11225)
DNA (402bp) protein (134aa)
Nudix family protein
seg (db=Seg db_id=seg from=49 to=64)
NUDIX_BOX (db=PatternScan db_id=PS00893 from=34 to=55 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=1 to=126 evalue=3.0e-15 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
ACD38_15_14
GWF2_OP11_38_7, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

11283..12179
DNA (897bp) protein (299aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE (db=HMMPanther db_id=PTHR11374 from=139 to=275 evalue=1.7e-34 interpro_id=IPR014028 interpro_description=UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: NAD or NADH binding (GO:0051287), Biological Process: oxidation reduction (GO:0055114))
6-phosphogluconate dehydrogenase C-terminal domain-like (db=superfamily db_id=SSF48179 from=181 to=278 evalue=1.4e-27 interpro_id=IPR008927 interpro_description=6-phosphogluconate dehydrogenase, C-terminal-like GO=Molecular Function: oxidoreductase activity (GO:0016491))
ACD38_15_15
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(12184..12543)
DNA (360bp) protein (120aa)
hypothetical protein
UPF0102 (db=HMMPfam db_id=PF02021 from=10 to=100 evalue=2.0e-24 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=8 to=110 evalue=1.2e-20 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like GO=Molecular Function: DNA binding (GO:0003677))
UPF0102 (db=HAMAP db_id=MF_00048 from=3 to=113 evalue=20.285 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
ACD38_15_16
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

12580..14085
DNA (1506bp) protein (502aa)
Phosphoenolpyruvate carboxylase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVN3_9BACT (db=UNIREF evalue=3.0e-138 bit_score=495.0 identity=46.32 coverage=99.003984063745)
phosphoenolpyruvate carboxylase
phosphoenolpyruvate carboxylase
PEPCase_arch: phosphoenolpyruvate carbox (db=HMMTigr db_id=TIGR02751 from=5 to=501 evalue=1.0e-168 interpro_id=IPR007566 interpro_description=Phosphoenolpyruvate carboxylase, subgroup GO=Biological Process: tricarboxylic acid cycle (GO:0006099), Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964), Biological Process: carbon fixation (GO:0015977))
PEP + HCO3 to OAA + Pi Together you can bypass pyruvate kinase with malic enzyme and PEP carboxylase Used for fermentative aa synthesis to get lysine/threonine from OAA in Cornybacterium glutamicum Part of PEP-pyruvate-OAA node- highly relevant switch for carbon flux distribution in central metabolism. Archaea have a different amino acid structure than bacteria nad plants. (Sauer, 2005) kelly wrighton (11/15/12)
ACD38_15_17
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists


comp(14094..14408)
DNA (315bp) protein (105aa)
50S ribosomal protein L19P
seg (db=Seg db_id=seg from=78 to=89)
Ribosomal_L19 (db=HMMPfam db_id=PF01245 from=9 to=101 evalue=2.3e-32 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L19 (db=HMMPanther db_id=PTHR15680 from=10 to=101 evalue=5.3e-27 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD38_15_18
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(14428..17982)
DNA (3555bp) protein (1185aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB25_THET1 (db=UNIREF evalue=0.0 bit_score=983.0 identity=44.78 coverage=98.1434599156118)
seg (db=Seg db_id=seg from=416 to=427)
ACD38_15_19
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(18079..19446)
DNA (1368bp) protein (456aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Aquifex aeolicus RepID=GATB_AQUAE (db=UNIREF evalue=3.0e-109 bit_score=399.0 identity=46.39 coverage=99.5614035087719)
GATB (db=PatternScan db_id=PS01234 from=145 to=159 evalue=0.0 interpro_id=IPR017958 interpro_description=Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO=Biological Process: translation (GO:0006412), Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884))
ACD38_15_20
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(19686..21044)
DNA (1359bp) protein (453aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDH5_THET1 (db=UNIREF evalue=2.0e-123 bit_score=446.0 identity=52.08 coverage=98.0132450331126)
seg (db=Seg db_id=seg from=327 to=346)
ACD38_15_21
GWC2_OP11_40_12, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(21053..21352)
DNA (300bp) protein (100aa)
excinuclease ABC subunit C
Excinuclease ABC, C subunit domain protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R9I7_9RHOB (db=UNIREF evalue=3.0e-21 bit_score=103.0 identity=57.47 coverage=85.0)
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=2 to=90 evalue=2.8e-17 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG (db=HMMPfam db_id=PF01541 from=4 to=76 evalue=1.5e-11 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
ACD38_15_22
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(21412..21705)
DNA (294bp) protein (98aa)
gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
aspartyl/glutamyl-tRNA amidotransferase subunit C n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850992 (db=UNIREF evalue=4.0e-18 bit_score=93.6 identity=45.74 coverage=94.8979591836735)
gatC: glutamyl-tRNA(Gln) and/or aspartyl-tRN (db=HMMTigr db_id=TIGR00135 from=3 to=95 evalue=1.8e-29 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
Glu-tRNAGln amidotransferase C subunit (db=superfamily db_id=SSF141000 from=2 to=93 evalue=6.9e-27)
ACD38_15_23

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comp(21710..22633)
DNA (924bp) protein (308aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
seg (db=Seg db_id=seg from=202 to=218)
ACD38_15_24
GWC2_OP11_40_12, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(22658..23209)
DNA (552bp) protein (184aa)
LemA family protein
LemA-like protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B255F (db=UNIREF evalue=2.0e-43 bit_score=177.0 identity=63.43 coverage=72.2826086956522)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=161 to=176)
ACD38_15_25
GWA2_OP11_ACD38-rel_39_33, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(23213..24964)
DNA (1752bp) protein (584aa)
hypothetical protein
hypothetical protein
PHP domain protein n=1 Tax=Thermincola sp. JR RepID=D5X7Z7_9FIRM (db=UNIREF evalue=7.0e-116 bit_score=421.0 identity=40.75 coverage=97.4315068493151)
seg (db=Seg db_id=seg from=120 to=132)
ACD38_15_26
GWC2_OP11_40_12, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(25032..25934)
DNA (903bp) protein (301aa)
25032..25934 - (rbs_motif=TAAT rbs_spacer=5bp)
Uncharacterized protein {ECO:0000313|EMBL:KKR41722.1}; TaxID=1618431 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWC2_40_12.;"
ACD38_15_27

Not on your lists

comp(26026..27009)
DNA (984bp) protein (328aa)
coiled-coil (db=Coil db_id=coil from=204 to=225 evalue=NA)
seg (db=Seg db_id=seg from=3 to=14)
TPR-like (db=superfamily db_id=SSF48452 from=73 to=263 evalue=2.5e-10)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=68 to=265 evalue=9.6e-07 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
Displaying 27 items

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