Alias: ACD3_227.44815.70
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD3_13_1
ACD3, ACD3, ACD3, ACD3, Gracilibacteria, Bacteria
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Not on your lists |
2..115
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2..115 + (rbs_motif=None rbs_spacer=None)
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ACD3_13_2
unknown
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Not on your lists |
135..950
|
Zeta toxin n=1 Tax=Enterococcus faecium E1071 RepID=D4QUQ9_ENTFC (db=UNIREF evalue=7.0e-23 bit_score=111.0 identity=31.94 coverage=68.0147058823529)
hypothetical protein (db=KEGG evalue=2.0e-19 bit_score=99.4 identity=28.02 coverage=65.4411764705882)
Zeta_toxin (db=HMMPfam db_id=PF06414 from=24 to=187 evalue=1.6e-23 interpro_id=IPR010488 interpro_description=Zeta toxin GO=Biological Process: cell killing (GO:0001906), Molecular Function: ATP binding (GO:0005524))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=8 to=155 evalue=1.5e-06)
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ACD3_13_3
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
1343..1915
|
seg (db=Seg db_id=seg from=70 to=76)
seg 70..76 Tax=ACD3
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ACD3_13_4
unknown
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Not on your lists |
comp(2019..2591)
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phosphatase
Phosphoglycerate mutase family protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LD12_9BACT (db=UNIREF evalue=1.0e-10 bit_score=69.3 identity=29.01 coverage=78.5340314136126)
seg (db=Seg db_id=seg from=166 to=177)
Phosphoglycerate mutase-like (db=superfamily db_id=SSF53254 from=1 to=183 evalue=2.1e-25)
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ACD3_13_5
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
2737..2919
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2737..2919 + (rbs_motif=TTAA rbs_spacer=10bp)
hypothetical protein Tax=ACD3
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ACD3_13_6
unknown
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Not on your lists |
comp(2900..4180)
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hypothetical protein
Tyrosyl-tRNA synthetase 1 n=4 Tax=Streptococcus RepID=SYY1_STRT1 (db=UNIREF evalue=5.0e-72 bit_score=275.0 identity=37.44 coverage=97.1896955503513)
TYROSYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11766 from=1 to=426 evalue=1.4e-83 interpro_id=IPR002307 interpro_description=Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tyrosine-tRNA ligase activity (GO:0004831), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tyrosyl-tRNA aminoacylation (GO:0006437))
tyrS: tyrosyl-tRNA synthetase (db=HMMTigr db_id=TIGR00234 from=1 to=426 evalue=1.6e-65 interpro_id=IPR002307 interpro_description=Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tyrosine-tRNA ligase activity (GO:0004831), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tyrosyl-tRNA aminoacylation (GO:0006437))
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ACD3_13_7
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(4297..5013)
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SerB; phosphoserine phosphatase
HAD-like (db=superfamily db_id=SSF56784 from=16 to=231 evalue=6.8e-23)
serB; phosphoserine phosphatase; K01079 phosphoserine phosphatase [EC:3.1.3.3] alias=ACD3_C00013G00007,ACD3_227.44815.70G0007,ACD3_227.44815.70_7 id=49725 tax=ACD3 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
serB; phosphoserine phosphatase; K01079 phosphoserine phosphatase [EC:3.1.3.3] Tax=ACD3
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makes serine
Jill Banfield
(11/15/12)
Phosphoserine-serine
Jill Banfield
(11/15/12)
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ACD3_13_8
unknown
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Not on your lists |
comp(5019..6707)
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hypothetical protein
Pyridoxal-dependent decarboxylase domain protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7N4_CLOBO (db=UNIREF evalue=2.0e-54 bit_score=217.0 identity=31.28 coverage=80.639431616341)
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=92 to=554 evalue=2.2e-38 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
no description (db=Gene3D db_id=G3DSA:3.40.640.10 from=112 to=422 evalue=3.3e-28 interpro_id=IPR015421 interpro_description=Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: pyridoxal phosphate binding (GO:0030170))
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ACD3_13_9
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(6714..7934)
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tyrosyl-tRNA synthetase
tyrosyl-tRNA synthetase
Tyrosyl-tRNA synthetase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YNJ3_9FLAO (db=UNIREF evalue=1.0e-104 bit_score=384.0 identity=50.0 coverage=96.3144963144963)
seg (db=Seg db_id=seg from=352 to=367)
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ACD3_13_10
unknown
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Not on your lists |
comp(8102..10252)
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Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RBQ7_9CHLA (db=UNIREF evalue=3.0e-10 bit_score=71.2 identity=21.43 coverage=42.3988842398884)
waaF; lipopolysaccharide heptosyltransferase II (EC:2.4.1.-); K02843 heptosyltransferase II [EC:2.4.-.-] (db=KEGG evalue=2.0e-07 bit_score=62.0 identity=27.14 coverage=33.8912133891213)
seg (db=Seg db_id=seg from=411 to=427)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=361 to=714 evalue=7.8e-29)
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ACD3_13_11
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(10281..12335)
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hypothetical protein
seg (db=Seg db_id=seg from=641 to=653)
seg (db=Seg db_id=seg from=90 to=105)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=6 to=303 evalue=1.3e-13)
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ACD3_13_12
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(12551..15109)
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KWG repeat protein,putative S-layer protein
S-layer domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=D3EHX2_GEOS4 (db=UNIREF evalue=1.0e-17 bit_score=95.9 identity=35.87 coverage=20.3985932004689)
seg (db=Seg db_id=seg from=577 to=595)
seg (db=Seg db_id=seg from=133 to=152)
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ACD3_13_13
ACD3, ACD3, ACD3, ACD3, Gracilibacteria, Bacteria
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Not on your lists |
15235..15327
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15235..15327 + (rbs_motif=TTAA rbs_spacer=12bp)
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ACD3_13_14
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
15374..17386
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seg (db=Seg db_id=seg from=621 to=632)
seg (db=Seg db_id=seg from=303 to=316)
seg (db=Seg db_id=seg from=269 to=282)
seg (db=Seg db_id=seg from=158 to=171)
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ACD3_13_15
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
17533..19395
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seg (db=Seg db_id=seg from=183 to=196)
seg (db=Seg db_id=seg from=298 to=312)
seg (db=Seg db_id=seg from=337 to=359)
seg (db=Seg db_id=seg from=13 to=45)
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ACD3_13_16
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(19595..19909)
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19595..19909 - (rbs_motif=TTAA rbs_spacer=10bp)
hypothetical protein Tax=ACD3
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ACD3_13_17
unknown
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Not on your lists |
20018..20368
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50S ribosomal protein L19 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YD27_9FIRM (db=UNIREF evalue=1.0e-22 bit_score=108.0 identity=47.41 coverage=97.4358974358974)
rplS; 50S ribosomal protein L19
Ribosomal_L19 (db=HMMPfam db_id=PF01245 from=4 to=114 evalue=1.7e-30 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplS_bact: ribosomal protein L19 (db=HMMTigr db_id=TIGR01024 from=3 to=116 evalue=9.5e-28 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD3_13_18
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
20485..27093
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peptidase inhibitor-like protein
seg (db=Seg db_id=seg from=1845 to=1862)
seg (db=Seg db_id=seg from=1417 to=1428)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=48)
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ACD3_13_19
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
27318..27668
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Ribosome-binding factor A, RbfA (db=superfamily db_id=SSF89919 from=4 to=100 evalue=2.0e-10 interpro_id=IPR000238 interpro_description=Ribosome-binding factor A GO=Biological Process: rRNA processing (GO:0006364))
RBFA (db=HMMPfam db_id=PF02033 from=16 to=100 evalue=2.0e-10 interpro_id=IPR000238 interpro_description=Ribosome-binding factor A GO=Biological Process: rRNA processing (GO:0006364))
no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=4 to=115 evalue=3.8e-07 interpro_id=IPR015946 interpro_description=K homology-like, alpha/beta)
RBFA_METCA_Q609C1; (db=BlastProDom db_id=PD007327 from=28 to=90 evalue=3.0e-05 interpro_id=IPR000238 interpro_description=Ribosome-binding factor A GO=Biological Process: rRNA processing (GO:0006364))
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ACD3_13_20
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
27655..28656
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=72 to=94)
seg (db=Seg db_id=seg from=13 to=34)
transmembrane_regions 72..94 Tax=ACD3
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ACD3_13_21
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
28656..29099
|
signal peptidase II
seg (db=Seg db_id=seg from=62 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=138)
transmembrane_regions (db=TMHMM db_id=tmhmm from=86 to=106)
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ACD3_13_22
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
29081..29830
|
seg (db=Seg db_id=seg from=186 to=198)
seg (db=Seg db_id=seg from=101 to=112)
transmembrane_regions (db=TMHMM db_id=tmhmm from=187 to=207)
transmembrane_regions (db=TMHMM db_id=tmhmm from=155 to=177)
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ACD3_13_23
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
29932..30168
|
hypothetical protein
DUF1653 (db=HMMPfam db_id=PF07866 from=7 to=74 evalue=4.1e-19 interpro_id=IPR012868 interpro_description=Protein of unknown function DUF1653)
protein of unknown function DUF1653 alias=ACD3_C00013G00023,ACD3_227.44815.70G0023,ACD3_227.44815.70_23 id=49726 tax=ACD3 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
protein of unknown function DUF1653 Tax=ACD3
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ACD3_13_24
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
30198..30740
|
hypothetical protein; K09141 hypothetical protein (db=KEGG evalue=3.0e-09 bit_score=64.3 identity=28.96 coverage=92.8176795580111)
AMMECR1 (db=HMMPfam db_id=PF01871 from=2 to=176 evalue=1.6e-08 interpro_id=IPR002733 interpro_description=AMMECR1)
AMMECR1-like (db=superfamily db_id=SSF143447 from=1 to=178 evalue=1.6e-06)
hypothetical protein; K09141 hypothetical protein alias=ACD3_C00013G00024,ACD3_227.44815.70_24,ACD3_227.44815.70G0024 id=49714 tax=ACD3 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae organism_group=BD1-5 organism_desc=BD1-5
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ACD3_13_25
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
30792..31676
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=100)
transmembrane_regions (db=TMHMM db_id=tmhmm from=138 to=160)
transmembrane_regions (db=TMHMM db_id=tmhmm from=165 to=182)
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ACD3_13_26
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
31713..32852
|
HD superfamily hydrolase
seg (db=Seg db_id=seg from=40 to=54)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=190 to=371 evalue=2.6e-23)
no description (db=Gene3D db_id=G3DSA:1.10.3210.10 from=180 to=289 evalue=3.6e-05)
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ACD3_13_27
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(32898..33695)
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32898..33695 - (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD3
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ACD3_13_28
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(33846..36287)
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Phenylalanyl-tRNA synthetase, beta subunit n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J6F7_9BACL (db=UNIREF evalue=3.0e-88 bit_score=330.0 identity=29.35 coverage=99.7542997542998)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
pheT_bact: phenylalanyl-tRNA synthetase, be (db=HMMTigr db_id=TIGR00472 from=1 to=812 evalue=1.1e-125 interpro_id=IPR004532 interpro_description=Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: phenylalanyl-tRNA
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ACD3_13_29
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
36461..36814
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=96 to=115)
transmembrane_regions 54..76 Tax=ACD3
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ACD3_13_30
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
36816..37268
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=53)
seg (db=Seg db_id=seg from=41 to=53)
transmembrane_regions 13..32 Tax=ACD3
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