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ACD3_16

Alias: ACD3_1493.62033.67

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Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_16_1
ACD3, Gracilibacteria, Bacteria

Not on your lists

1..459
DNA (459bp) protein (153aa)
1..459 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD3
ACD3_16_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

468..1046
DNA (579bp) protein (193aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
seg (db=Seg db_id=seg from=155 to=162)
transmembrane_regions 4..21 Tax=ACD3
ACD3_16_3
ACD3, Gracilibacteria, Bacteria

Not on your lists

1058..1510
DNA (453bp) protein (151aa)
1058..1510 + (rbs_motif=TTAA rbs_spacer=11bp)
hypothetical protein Tax=ACD3
ACD3_16_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

1971..4403
DNA (2433bp) protein (811aa)
seg (db=Seg db_id=seg from=158 to=171)
seg (db=Seg db_id=seg from=60 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
coiled-coil (db=Coil db_id=coil from=117 to=170 evalue=NA)
ACD3_16_5
ACD3, Gracilibacteria, Bacteria

Not on your lists

4499..4864
DNA (366bp) protein (122aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
seg (db=Seg db_id=seg from=66 to=89)
transmembrane_regions 12..34 Tax=ACD3
ACD3_16_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(5028..5759)
DNA (732bp) protein (244aa)
5028..5759 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD3
ACD3_16_7
ACD3, Gracilibacteria, Bacteria

Not on your lists

6065..6253
DNA (189bp) protein (63aa)
6065..6253 + (rbs_motif=TTAA rbs_spacer=13bp)
hypothetical protein Tax=ACD3
ACD3_16_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

6283..6528
DNA (246bp) protein (82aa)
6283..6528 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD3
ACD3_16_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

6646..6873
DNA (228bp) protein (76aa)
seg (db=Seg db_id=seg from=47 to=61)
seg (db=Seg db_id=seg from=6 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
ACD3_16_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(6959..7933)
DNA (975bp) protein (325aa)
ABC transporter
seg (db=Seg db_id=seg from=305 to=322)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF16 from=5 to=263 evalue=2.5e-54)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=5 to=263 evalue=2.5e-54)
ACD3_16_11
unknown

Not on your lists

comp(7952..8731)
DNA (780bp) protein (260aa)
hypothetical protein Plarl_01353 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169423B (db=UNIREF evalue=8.0e-12 bit_score=74.3 identity=28.96 coverage=96.9230769230769)
protein of unknown function DUF990 (db=KEGG evalue=2.0e-07 bit_score=60.1 identity=25.86 coverage=98.4615384615385)
transmembrane_regions (db=TMHMM db_id=tmhmm from=221 to=243)
transmembrane_regions (db=TMHMM db_id=tmhmm from=189 to=211)
ACD3_16_12
unknown

Not on your lists

comp(8732..9529)
DNA (798bp) protein (266aa)
hypothetical protein
ABC transporter permease protein n=1 Tax=Bacillus thuringiensis serovar pakistani str. T13001 RepID=C3EEB0_BACTU (db=UNIREF evalue=1.0e-20 bit_score=103.0 identity=26.82 coverage=97.3684210526316)
transmembrane_regions (db=TMHMM db_id=tmhmm from=230 to=252)
transmembrane_regions (db=TMHMM db_id=tmhmm from=201 to=223)
ACD3_16_13
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(9532..10104)
DNA (573bp) protein (191aa)
seg (db=Seg db_id=seg from=103 to=118)
seg 103..118 Tax=ACD3
ACD3_16_14
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(10216..11610)
DNA (1395bp) protein (465aa)
xaa-His dipeptidase
coiled-coil (db=Coil db_id=coil from=75 to=96 evalue=NA)
PEPTIDASE M20 FAMILY MEMBER (db=HMMPanther db_id=PTHR11014 from=1 to=464 evalue=3.8e-77)
AMINOACYL-HISTIDINE PEPTIDASE (db=HMMPanther db_id=PTHR11014:SF2 from=1 to=464 evalue=3.8e-77 interpro_id=IPR001160 interpro_description=Peptidase M20C, Xaa-His dipeptidase GO=Biological Process: proteolysis (GO:0006508))
ACD3_16_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(11721..12026)
DNA (306bp) protein (102aa)
coiled-coil (db=Coil db_id=coil from=24 to=45 evalue=NA)
coiled-coil 24..45 Tax=ACD3
ACD3_16_16
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(12450..13631)
DNA (1182bp) protein (394aa)
Predicted ATPase (AAA+ superfamily) n=7 Tax=Bacteroides RepID=D6CY34_9BACE (db=UNIREF evalue=1.0e-89 bit_score=333.0 identity=45.55 coverage=97.4619289340102)
Predicted ATPase (AAA+ superfamily)
Predicted ATPase (AAA+ superfamily)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=2 to=199 evalue=2.6e-16)
ACD3_16_17
ACD3, Gracilibacteria, Bacteria

Not on your lists

13656..13790
DNA (135bp) protein (45aa)
13656..13790 + (rbs_motif=TTAA rbs_spacer=6bp)
hypothetical protein Tax=ACD3
ACD3_16_18
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(18095..18373)
DNA (279bp) protein (93aa)
cas2; CRISPR-associated endoribonuclease Cas2
CRISPR_Cas2 (db=HMMPfam db_id=PF09827 from=1 to=77 evalue=1.0e-15 interpro_id=IPR019199 interpro_description=Virulence-associated protein D / CRISPR associated protein Cas2)
TTP0101/SSO1404-like (db=superfamily db_id=SSF143430 from=1 to=82 evalue=3.7e-12)
cas2: CRISPR-associated endoribonuclease Cas (db=HMMTigr db_id=TIGR01573 from=1 to=92 evalue=6.7e-07 interpro_id=IPR021127 interpro_description=CRISPR associated protein Cas2)
CRISPR repeat/spacer locus probably 14645 - 17830 bp region Jill Banfield (11/15/12)
ACD3_16_19
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(18383..19342)
DNA (960bp) protein (320aa)
cas1; CRISPR-associated endonuclease Cas1
seg (db=Seg db_id=seg from=133 to=144)
Cas_Cas1 (db=HMMPfam db_id=PF01867 from=21 to=283 evalue=3.7e-40 interpro_id=IPR002729 interpro_description=CRISPR-associated protein Cas1)
hypothetical protein alias=ACD3_1493.62033.67G0019,ACD3_1493.62033.67_19,ACD3_C00016G00019 id=49824 tax=ACD3 species=unknown genus=Francisella taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD3_16_20
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(19367..19951)
DNA (585bp) protein (195aa)
hypothetical protein
Cas_Cas4 (db=HMMPfam db_id=PF01930 from=7 to=179 evalue=6.9e-10)
hypothetical protein; K07464 putative RecB family exonuclease alias=ACD3_1493.62033.67_20,ACD3_1493.62033.67G0020,ACD3_C00016G00020 id=49808 tax=ACD3 species=unknown genus=Francisella taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
hypothetical protein; K07464 putative RecB family exonuclease Tax=ACD3
ACD3_16_21
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(19962..23705)
DNA (3744bp) protein (1248aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=4 Tax=Francisella novicida RepID=A0Q7Q2_FRATN (db=UNIREF evalue=4.0e-97 bit_score=360.0 identity=33.61 coverage=62.5)
seg (db=Seg db_id=seg from=152 to=164)
ACD3_16_22
ACD3, Gracilibacteria, Bacteria

Not on your lists

24062..24397
DNA (336bp) protein (112aa)
seg (db=Seg db_id=seg from=82 to=96)
seg 82..96 Tax=ACD3
ACD3_16_23
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(24820..33345)
DNA (8526bp) protein (2842aa)
hypothetical protein (db=KEGG evalue=1.0e-11 bit_score=78.2 identity=25.32 coverage=23.2582688247713)
seg (db=Seg db_id=seg from=1233 to=1243)
seg (db=Seg db_id=seg from=2185 to=2197)
seg (db=Seg db_id=seg from=2561 to=2588)
ACD3_16_24
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(33594..34535)
DNA (942bp) protein (314aa)
seg (db=Seg db_id=seg from=256 to=268)
seg 256..268 Tax=ACD3
ACD3_16_25
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(35263..37596)
DNA (2334bp) protein (778aa)
Penicillin-binding protein, transpeptidase protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
seg (db=Seg db_id=seg from=167 to=182)
beta-lactamase/transpeptidase-like (db=superfamily db_id=SSF56601 from=365 to=777 evalue=1.9e-66 interpro_id=IPR012338 interpro_description=Beta-lactamase-type transpeptidase fold)
ACD3_16_26
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(37596..38453)
DNA (858bp) protein (286aa)
37596..38453 - (rbs_motif=TTAA rbs_spacer=12bp)
hypothetical protein Tax=ACD3
ACD3_16_27
ACD3, Gracilibacteria, Bacteria

Not on your lists

38588..39724
DNA (1137bp) protein (379aa)
seg (db=Seg db_id=seg from=178 to=192)
seg (db=Seg db_id=seg from=366 to=371)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=139 to=150)
ACD3_16_28
ACD3, Gracilibacteria, Bacteria

Not on your lists

39726..40736
DNA (1011bp) protein (337aa)
seg (db=Seg db_id=seg from=14 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
transmembrane_regions 9..31 Tax=ACD3
ACD3_16_29

Not on your lists

40738..41706
DNA (969bp) protein (323aa)
hypothetical protein
CofD-like (db=superfamily db_id=SSF142338 from=1 to=315 evalue=6.1e-65)
CofD_related: conserved hypothetical pro (db=HMMTigr db_id=TIGR01826 from=5 to=318 evalue=2.6e-58 interpro_id=IPR010119 interpro_description=Uncharacterised protein family UPF0052)
UPF0052 (db=HMMPfam db_id=PF01933 from=14 to=296 evalue=7.0e-51 interpro_id=IPR002882 interpro_description=LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052)
ACD3_16_30
ACD3, Gracilibacteria, Bacteria

Not on your lists

41718..42254
DNA (537bp) protein (179aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
coiled-coil (db=Coil db_id=coil from=41 to=62 evalue=NA)
coiled-coil 41..62 Tax=ACD3
Displaying items 1-30 of 53 in total

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