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ACD3_27

Alias: ACD3_914.24984.76

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_27_1
ACD3, Gracilibacteria, Bacteria

Not on your lists

275..1495
DNA (1221bp) protein (407aa)
seg (db=Seg db_id=seg from=72 to=87)
seg (db=Seg db_id=seg from=211 to=218)
seg 72..87 Tax=ACD3
ACD3_27_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(1807..4497)
DNA (2691bp) protein (897aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=227 to=249)
transmembrane_regions (db=TMHMM db_id=tmhmm from=193 to=215)
seg (db=Seg db_id=seg from=856 to=871)
seg (db=Seg db_id=seg from=336 to=351)
ACD3_27_3

Not on your lists

4627..5136
DNA (510bp) protein (170aa)
hypothetical protein
seg (db=Seg db_id=seg from=91 to=102)
hypothetical protein alias=ACD3_C00027G00003,ACD3_914.24984.76G0003,ACD3_914.24984.76_3 id=50101 tax=ACD3 species=Methanosphaerula palustris genus=Methanosphaerula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_group=BD1-5 organism_desc=BD1-5
Uncharacterized protein {ECO:0000313|EMBL:EKE27299.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD3_27_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

5242..5580
DNA (339bp) protein (113aa)
5242..5580 + (rbs_motif=TTAA rbs_spacer=11bp)
hypothetical protein Tax=ACD3
ACD3_27_5
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(5637..6542)
DNA (906bp) protein (302aa)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=41 to=291 evalue=2.8e-08)
alpha/beta-Hydrolases Tax=ACD3
ACD3_27_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

6699..7118
DNA (420bp) protein (140aa)
protein of unknown function DUF523
DUF523 (db=HMMPfam db_id=PF04463 from=2 to=134 evalue=1.5e-23 interpro_id=IPR007553 interpro_description=Protein of unknown function DUF523)
hypothetical protein alias=ACD3_C00027G00006,ACD3_914.24984.76G0006,ACD3_914.24984.76_6 id=50117 tax=ACD3 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
hypothetical protein Tax=ACD3
ACD3_27_7
unknown

Not on your lists

7180..8469
DNA (1290bp) protein (430aa)
CBS domain protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RXH2_9FIRM (db=UNIREF evalue=1.0e-55 bit_score=220.0 identity=31.25 coverage=91.8604651162791)
integral membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=95 to=113)
transmembrane_regions (db=TMHMM db_id=tmhmm from=126 to=148)
ACD3_27_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

8503..8925
DNA (423bp) protein (141aa)
8503..8925 + (rbs_motif=TTAA rbs_spacer=6bp)
hypothetical protein Tax=ACD3
ACD3_27_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

9115..10050
DNA (936bp) protein (312aa)
seg (db=Seg db_id=seg from=290 to=299)
seg 290..299 Tax=ACD3
ACD3_27_10
unknown

Not on your lists

comp(10111..11541)
DNA (1431bp) protein (477aa)
23S rRNA m(5)U-1939 methyltransferase n=2 Tax=Clostridiales RepID=D4MWB4_9FIRM (db=UNIREF evalue=9.0e-72 bit_score=275.0 identity=35.89 coverage=94.1299790356394)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
TRMA_2 (db=PatternScan db_id=PS01231 from=459 to=469 evalue=0.0 interpro_id=IPR010280 interpro_description=(Uracil-5)-methyltransferase GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
RNA M5U METHYLTRANSFERASE (db=HMMPanther db_id=PTHR11061:SF2 from=37 to=476 evalue=9.0e-91)
ACD3_27_11
ACD3, Gracilibacteria, Bacteria

Not on your lists

11821..12018
DNA (198bp) protein (66aa)
11821..12018 + (rbs_motif=TTAA rbs_spacer=10bp)
hypothetical protein Tax=ACD3
ACD3_27_12
unknown

Not on your lists

12205..12663
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BST4_9RICK (db=UNIREF evalue=4.0e-10 bit_score=67.0 identity=25.93 coverage=86.9281045751634)
SCE87.16c; hypothetical protein (db=KEGG evalue=8.0e-09 bit_score=62.4 identity=23.97 coverage=76.4705882352941)
YbaK/ProRS associated domain (db=superfamily db_id=SSF55826 from=1 to=151 evalue=5.0e-15 interpro_id=IPR007214 interpro_description=YbaK/aminoacyl-tRNA synthetase-associated domain)
YbaK (db=HMMPfam db_id=PF04073 from=24 to=140 evalue=5.6e-14 interpro_id=IPR007214 interpro_description=YbaK/aminoacyl-tRNA synthetase-associated domain)
ACD3_27_13
ACD3, Gracilibacteria, Bacteria

Not on your lists

12774..13172
DNA (399bp) protein (133aa)
seg (db=Seg db_id=seg from=17 to=26)
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (db=superfamily db_id=SSF54593 from=1 to=122 evalue=3.9e-19)
no description (db=Gene3D db_id=G3DSA:3.10.180.10 from=6 to=123 evalue=1.6e-10)
Glyoxalase (db=HMMPfam db_id=PF00903 from=6 to=121 evalue=2.3e-08 interpro_id=IPR004360 interpro_description=Glyoxalase/bleomycin resistance protein/dioxygenase)
ACD3_27_14
ACD3, Gracilibacteria, Bacteria

Not on your lists

13371..13655
DNA (285bp) protein (95aa)
13371..13655 + (rbs_motif=TTAA rbs_spacer=8bp)
hypothetical protein Tax=ACD3
ACD3_27_15

Not on your lists

13675..14292
DNA (618bp) protein (206aa)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase (EC:2.1.1.77)
seg (db=Seg db_id=seg from=154 to=168)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=3 to=205 evalue=4.6e-42)
PCMT (db=HMMPfam db_id=PF01135 from=7 to=204 evalue=2.3e-36 interpro_id=IPR000682 interpro_description=Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO=Molecular Function: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (GO:0004719), Biological Process: protein modification process (GO:0006464))
ACD3_27_16
ACD3, Gracilibacteria, Bacteria

Not on your lists

14418..14843
DNA (426bp) protein (142aa)
Glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (db=superfamily db_id=SSF54593 from=1 to=138 evalue=3.7e-25)
no description (db=Gene3D db_id=G3DSA:3.10.180.30 from=1 to=137 evalue=3.1e-21)
3-dmu-9_3-mt (db=HMMPfam db_id=PF06983 from=3 to=135 evalue=3.8e-06)
ACD3_27_17
unknown

Not on your lists

14909..15178
DNA (270bp) protein (90aa)
Pathogenicity locus n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1Z6_9FIRM (db=UNIREF evalue=1.0e-17 bit_score=92.0 identity=51.85 coverage=88.8888888888889)
Pathogenicity locus.
Cdd1 (db=HMMPfam db_id=PF11731 from=3 to=87 evalue=3.9e-22 interpro_id=IPR021725 interpro_description=Pathogenicity locus)
Pathogenicity locus n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1Z6_9FIRM Tax=ACD3
ACD3_27_18
ACD3, Gracilibacteria, Bacteria

Not on your lists

15197..15823
DNA (627bp) protein (209aa)
metallo-beta-lactamase family protein (db=KEGG evalue=2.0e-21 bit_score=105.0 identity=37.14 coverage=79.9043062200957)
seg (db=Seg db_id=seg from=107 to=117)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=7 to=197 evalue=3.3e-36)
no description (db=Gene3D db_id=G3DSA:3.60.15.10 from=18 to=195 evalue=8.2e-27)
ACD3_27_19
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(15874..16422)
DNA (549bp) protein (183aa)
seg (db=Seg db_id=seg from=18 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
seg 18..28 Tax=ACD3
ACD3_27_20
ACD3, Gracilibacteria, Bacteria

Not on your lists

16534..17178
DNA (645bp) protein (215aa)
ribonuclease HII
seg (db=Seg db_id=seg from=67 to=84)
coiled-coil (db=Coil db_id=coil from=44 to=65 evalue=NA)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=4 to=203 evalue=4.7e-36 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
ACD3_27_21

Not on your lists

17197..18261
DNA (1065bp) protein (355aa)
coiled-coil (db=Coil db_id=coil from=34 to=72 evalue=NA)
seg (db=Seg db_id=seg from=85 to=100)
seg (db=Seg db_id=seg from=219 to=252)
seg (db=Seg db_id=seg from=335 to=346)
ACD3_27_22
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(18387..18794)
DNA (408bp) protein (136aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=7 to=29)
seg 7..29 Tax=ACD3
ACD3_27_23

Not on your lists

18882..20243
DNA (1362bp) protein (454aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
seg (db=Seg db_id=seg from=271 to=281)
seg (db=Seg db_id=seg from=15 to=30)
Uncharacterized protein {ECO:0000313|EMBL:EKE27319.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD3_27_24
ACD3, Gracilibacteria, Bacteria

Not on your lists

20248..22332
DNA (2085bp) protein (695aa)
adenylate cyclase
transmembrane_regions (db=TMHMM db_id=tmhmm from=322 to=341)
transmembrane_regions (db=TMHMM db_id=tmhmm from=346 to=363)
transmembrane_regions (db=TMHMM db_id=tmhmm from=376 to=398)
ACD3_27_25
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(22844..24568)
DNA (1725bp) protein (575aa)
coiled-coil (db=Coil db_id=coil from=234 to=255 evalue=NA)
seg (db=Seg db_id=seg from=558 to=569)
seg (db=Seg db_id=seg from=302 to=311)
seg (db=Seg db_id=seg from=27 to=38)
ACD3_27_26
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(24611..25048)
DNA (438bp) protein (146aa)
24611..25048 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD3
Displaying 26 items

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