Alias: ACD3_135.41972.67
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD3_44_1
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
3..731
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LamG domain-containing protein (db=KEGG evalue=5.0e-08 bit_score=61.2 identity=28.44 coverage=81.4814814814815)
Concanavalin A-like lectins/glucanases (db=superfamily db_id=SSF49899 from=33 to=239 evalue=1.8e-18 interpro_id=IPR008985 interpro_description=Concanavalin A-like lectin/glucanase)
LamG domain-containing protein alias=ACD3_C00044G00001,ACD3_135.41972.67G0001,ACD3_135.41972.67_1 id=50532 tax=ACD3 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
LamG protein {ECO:0000313|EMBL:EKE28645.1}; Flags: Fragment;; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD3_44_2
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(822..2351)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=356 to=378)
transmembrane_regions (db=TMHMM db_id=tmhmm from=393 to=415)
transmembrane_regions (db=TMHMM db_id=tmhmm from=460 to=482)
transmembrane_regions (db=TMHMM db_id=tmhmm from=486 to=503)
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ACD3_44_3
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
2433..4343
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vacB; ribonuclease R
vacB; ribonuclease R
Ribonuclease R n=1 Tax=Peptostreptococcus anaerobius 653-L RepID=D3MRG3_9FIRM (db=UNIREF evalue=2.0e-101 bit_score=374.0 identity=35.88 coverage=95.1334379905808)
seg (db=Seg db_id=seg from=191 to=200)
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ACD3_44_4
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
4622..7771
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putative PAS/PAC sensor protein (db=KEGG evalue=8.0e-09 bit_score=67.0 identity=34.51 coverage=10.3809523809524)
seg (db=Seg db_id=seg from=643 to=655)
seg (db=Seg db_id=seg from=499 to=512)
seg (db=Seg db_id=seg from=859 to=882)
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ACD3_44_5
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(7768..8958)
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seg (db=Seg db_id=seg from=179 to=196)
seg (db=Seg db_id=seg from=3 to=21)
PGBD-like (db=superfamily db_id=SSF47090 from=300 to=377 evalue=0.00033 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
PGBD-like (db=superfamily db_id=SSF47090 from=191 to=250 evalue=0.0088 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
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ACD3_44_6
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
9314..10375
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NusA antitermination factor
NusA: transcription termination factor NusA (db=HMMTigr db_id=TIGR01953 from=6 to=352 evalue=4.8e-88 interpro_id=IPR010213 interpro_description=Transcription termination factor NusA GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: transcription regulator activity (GO:0030528))
TRANSCRIPTION TERMINATION FACTOR NUSA (db=HMMPanther db_id=PTHR22648 from=1 to=353 evalue=2.7e-79)
NusA_N (db=HMMPfam db_id=PF08529 from=8 to=134 evalue=9.2e-31 interpro_id=IPR013735 interpro_description=Transcription factor NusA, N-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Molecular Function: protein binding (GO:0005515), Biological Process: regulation of transcription termination (GO:0031554))
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ACD3_44_7
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
10776..11243
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50S ribosomal protein L9 n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBF8_9CLOT (db=UNIREF evalue=1.0e-16 bit_score=88.6 identity=34.97 coverage=89.1025641025641)
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 (db=KEGG evalue=1.0e-14 bit_score=82.0 identity=33.57 coverage=89.1025641025641)
coiled-coil (db=Coil db_id=coil from=46 to=67 evalue=NA)
L9: ribosomal protein L9 (db=HMMTigr db_id=TIGR00158 from=6 to=154 evalue=7.3e-21 interpro_id=IPR020594 interpro_description=Ribosomal protein L9, bacteria/chloroplast GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD3_44_8
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
11252..11650
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Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] (db=KEGG evalue=8.0e-10 bit_score=65.9 identity=35.61 coverage=94.7368421052632)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
UPF0081 (db=HMMPfam db_id=PF03652 from=2 to=130 evalue=6.3e-19 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=1 to=132 evalue=8.1e-19 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
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ACD3_44_9
unknown
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Not on your lists |
11680..12384
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Undecaprenyl diphosphate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KW41_9FIRM (db=UNIREF evalue=7.0e-37 bit_score=157.0 identity=36.21 coverage=96.1702127659574)
uppS; di-trans,poly-cis-decaprenylcistransferase (EC:2.5.1.31)
DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE (db=HMMPanther db_id=PTHR10291 from=2 to=234 evalue=6.8e-50 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
Prenyltransf (db=HMMPfam db_id=PF01255 from=6 to=232 evalue=9.1e-49 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
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ACD3_44_10
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(12386..12754)
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histidine kinase (db=KEGG evalue=9.0e-13 bit_score=75.5 identity=36.89 coverage=81.3008130081301)
CheY-like (db=superfamily db_id=SSF52172 from=3 to=122 evalue=1.6e-24 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=7 to=122 evalue=1.9e-19)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=7 to=121 evalue=9.4e-18)
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ACD3_44_11
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
13021..13941
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PHP domain-like (db=superfamily db_id=SSF89550 from=1 to=301 evalue=4.8e-18 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
PHP domain-like 1..301 Tax=ACD3
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ACD3_44_12
unknown
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Not on your lists |
13955..14422
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Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J630_9FLAO (db=UNIREF evalue=1.0e-17 bit_score=92.4 identity=38.46 coverage=89.7435897435898)
hypothetical protein (db=KEGG evalue=1.0e-12 bit_score=75.5 identity=37.06 coverage=89.7435897435898)
transmembrane_regions (db=TMHMM db_id=tmhmm from=119 to=141)
transmembrane_regions (db=TMHMM db_id=tmhmm from=86 to=107)
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ACD3_44_13
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
14776..14931
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14776..14931 + (rbs_motif=TTAA rbs_spacer=12bp)
hypothetical protein Tax=ACD3
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ACD3_44_14
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
14989..15453
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NUDIX hydrolase
seg (db=Seg db_id=seg from=132 to=145)
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=6 to=152 evalue=6.2e-16 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=1 to=135 evalue=3.9e-12 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
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ACD3_44_15
unknown
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Not on your lists |
15471..15920
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MutT/nudix family protein n=2 Tax=Bacteria RepID=C3RRD7_9MOLU (db=UNIREF evalue=2.0e-21 bit_score=104.0 identity=40.31 coverage=84.6666666666667)
ADP-ribose pyrophosphatase
Nudix (db=superfamily db_id=SSF55811 from=7 to=149 evalue=1.2e-24 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=12 to=135 evalue=3.0e-17 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
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ACD3_44_16
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
16014..17468
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seg (db=Seg db_id=seg from=463 to=482)
seg (db=Seg db_id=seg from=247 to=259)
seg (db=Seg db_id=seg from=210 to=225)
seg (db=Seg db_id=seg from=18 to=31)
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ACD3_44_17
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
17474..18112
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seg (db=Seg db_id=seg from=196 to=207)
seg (db=Seg db_id=seg from=9 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions 7..29 Tax=ACD3
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ACD3_44_18
unknown
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Not on your lists |
comp(18140..19075)
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Pseudouridine synthase n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3W9T1_FUSMR (db=UNIREF evalue=4.0e-51 bit_score=205.0 identity=42.28 coverage=83.0128205128205)
RluA family pseudouridine synthase
seg (db=Seg db_id=seg from=51 to=64)
PSI_RLU (db=PatternScan db_id=PS01129 from=135 to=149 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
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ACD3_44_19
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(19089..19580)
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seg (db=Seg db_id=seg from=135 to=162)
Nudix (db=superfamily db_id=SSF55811 from=9 to=154 evalue=3.7e-19 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=6 to=151 evalue=7.8e-13 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=19 to=136 evalue=1.6e-12 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
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ACD3_44_20
unknown
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Not on your lists |
comp(19626..20618)
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hypothetical protein
Putative uncharacterized protein n=1 Tax=Bacillus thuringiensis serovar andalousiensis BGSC 4AW1 RepID=C3GAF7_BACTU (db=UNIREF evalue=6.0e-23 bit_score=111.0 identity=26.6 coverage=91.8429003021148)
Putative uncharacterized protein n=1 Tax=Bacillus thuringiensis serovar andalousiensis BGSC 4AW1 RepID=C3GAF7_BACTU Tax=ACD3
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ACD3_44_21
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(20629..20748)
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20629..20748 - (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD3
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ACD3_44_22
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(20821..21138)
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seg (db=Seg db_id=seg from=87 to=105)
Uncharacterized protein {ECO:0000313|EMBL:EKE28625.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD3_44_23
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(21154..21786)
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50S ribosomal protein L25
seg (db=Seg db_id=seg from=185 to=210)
Ribosomal protein L25-like (db=superfamily db_id=SSF50715 from=2 to=190 evalue=2.9e-44 interpro_id=IPR011035 interpro_description=Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO=Biological Process: translation (GO:0006412))
ctc_TL5: ribosomal protein L25, Ctc-form (db=HMMTigr db_id=TIGR00731 from=4 to=180 evalue=3.8e-31 interpro_id=IPR001021 interpro_description=Ribosomal protein L25 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: 5S rRNA binding (GO:0008097))
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ACD3_44_24
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
21818..21940
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21818..21940 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD3
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ACD3_44_25
unknown
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Not on your lists |
21882..23012
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yajR; hypothetical protein
Adventurous gliding motility protein P n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q093S7_STIAU (db=UNIREF evalue=4.0e-19 bit_score=99.4 identity=33.82 coverage=35.8090185676393)
transmembrane_regions (db=TMHMM db_id=tmhmm from=94 to=116)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
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ACD3_44_26
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(23061..23498)
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seg (db=Seg db_id=seg from=67 to=78)
seg 67..78 Tax=ACD3
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ACD3_44_27
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
23654..24712
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Monogalactosyldiacylglycerol synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCI7_9BACT (db=UNIREF evalue=5.0e-15 bit_score=85.5 identity=23.53 coverage=86.685552407932)
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase fused to PHP family phosphoesterase (db=KEGG evalue=2.0e-14 bit_score=83.6 identity=22.47 coverage=96.0339943342776)
seg (db=Seg db_id=seg from=159 to=175)
MGDG_synth (db=HMMPfam db_id=PF06925 from=15 to=173 evalue=6.4e-10 interpro_id=IPR009695 interpro_description=Monogalactosyldiacylglycerol synthase GO=Biological Process: glycolipid biosynthetic process (GO:0009247), Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758))
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ACD3_44_28
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
24740..25789
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S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
seg (db=Seg db_id=seg from=230 to=239)
queA: S-adenosylmethionine:tRNA ribosyltrans (db=HMMTigr db_id=TIGR00113 from=1 to=349 evalue=4.3e-106 interpro_id=IPR003699 interpro_description=Queuosine biosynthesis protein GO=Biological Process: queuosine biosynthetic process (GO:0008616), Molecular Function: transferase activity (GO:0016740), Molecular Function: isomerase activity (GO:0016853))
QueA-like (db=superfamily db_id=SSF111337 from=1 to=349 evalue=8.6e-98 interpro_id=IPR003699 interpro_description=Queuosine biosynthesis protein GO=Biological Process: queuosine biosynthetic process (GO:0008616), Molecular Function: transferase activity (GO:0016740), Molecular Function: isomerase activity (GO:0016853))
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ACD3_44_29
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(25791..26576)
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cell wall biosynthesis glycosyltransferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=20 to=243 evalue=3.0e-25)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=23 to=205 evalue=5.3e-20)
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ACD3_44_30
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(26614..27219)
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hypothetical protein
DedA family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AKP6_PELPD (db=UNIREF evalue=2.0e-29 bit_score=132.0 identity=43.57 coverage=68.3168316831683)
seg (db=Seg db_id=seg from=143 to=157)
transmembrane_regions (db=TMHMM db_id=tmhmm from=140 to=162)
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