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ACD3_50

Alias: ACD3_1143.39084.65

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_50_1
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(174..776)
DNA (603bp) protein (201aa)
hypothetical protein
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=7 to=195 evalue=9.3e-39)
no description (db=Gene3D db_id=G3DSA:3.40.50.970 from=10 to=199 evalue=6.7e-32)
TPP_enzyme_C (db=HMMPfam db_id=PF02775 from=49 to=186 evalue=8.2e-18 interpro_id=IPR011766 interpro_description=Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: thiamin pyrophosphate binding (GO:0030976))
ACD3_50_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

1612..1866
DNA (255bp) protein (85aa)
seg (db=Seg db_id=seg from=50 to=67)
seg 50..67 Tax=ACD3
ACD3_50_3
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(2514..2933)
DNA (420bp) protein (140aa)
2514..2933 - (rbs_motif=TTAA rbs_spacer=15bp)
hypothetical protein Tax=ACD3
ACD3_50_4
unknown

Not on your lists

3135..4580
DNA (1446bp) protein (482aa)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMJ8_9FIRM (db=UNIREF evalue=2.0e-23 bit_score=114.0 identity=34.94 coverage=47.7178423236515)
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=2 to=252 evalue=3.2e-28 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Ribulose-phoshate binding barrel (db=superfamily db_id=SSF51366 from=1 to=247 evalue=2.3e-26 interpro_id=IPR011060 interpro_description=Ribulose-phosphate binding barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD3_50_5
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(6157..7083)
DNA (927bp) protein (309aa)
Dihydroorotate dehydrogenase n=1 Tax=Shewanella violacea DSS12 RepID=D4ZB29_SHEVD (db=UNIREF evalue=3.0e-93 bit_score=345.0 identity=53.59 coverage=98.705501618123)
pyrD-2; dihydroorotate dehydrogenase
pyrD-2; dihydroorotate dehydrogenase
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=3 to=303 evalue=3.4e-56 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD3_50_6

Not on your lists

comp(7242..8246)
DNA (1005bp) protein (335aa)
tyrosine recombinase XerC
seg (db=Seg db_id=seg from=202 to=212)
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=139 to=334 evalue=2.5e-42 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=144 to=330 evalue=1.1e-39 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
ACD3_50_7
ACD3, Gracilibacteria, Bacteria

Not on your lists


comp(9382..12027)
DNA (2646bp) protein (882aa)
valyl-tRNA synthetase (EC:6.1.1.9)
valyl-tRNA synthetase (EC:6.1.1.9)
Valyl-tRNA synthetase n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J217_9BACL (db=UNIREF evalue=0.0 bit_score=675.0 identity=41.97 coverage=96.7120181405896)
coiled-coil (db=Coil db_id=coil from=857 to=878 evalue=NA)
ACD3_50_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

12153..12944
DNA (792bp) protein (264aa)
12153..12944 + (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=ACD3
ACD3_50_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

12947..14044
DNA (1098bp) protein (366aa)
amidohydrolase 2
Metallo-dependent hydrolases (db=superfamily db_id=SSF51556 from=41 to=343 evalue=2.6e-17)
Amidohydro_2 (db=HMMPfam db_id=PF04909 from=177 to=342 evalue=2.0e-15 interpro_id=IPR006992 interpro_description=Amidohydrolase 2 GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
amidohydrolase 2 alias=ACD3_C00050G00009,ACD3_1143.39084.65G0009,ACD3_1143.39084.65_9 id=50649 tax=ACD3 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown organism_group=BD1-5 organism_desc=BD1-5
ACD3_50_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

14123..15913
DNA (1791bp) protein (597aa)
response regulator receiver modulated diguanylate cyclase (db=KEGG evalue=4.0e-10 bit_score=70.5 identity=26.45 coverage=36.5159128978224)
transmembrane_regions (db=TMHMM db_id=tmhmm from=40 to=62)
transmembrane_regions (db=TMHMM db_id=tmhmm from=171 to=193)
transmembrane_regions (db=TMHMM db_id=tmhmm from=144 to=158)
ACD3_50_11
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(16006..17289)
DNA (1284bp) protein (428aa)
16006..17289 - (rbs_motif=TTA rbs_spacer=13bp)
hypothetical protein Tax=ACD3
ACD3_50_12

Not on your lists

comp(17437..17850)
DNA (414bp) protein (138aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
seg (db=Seg db_id=seg from=22 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
ACD3_50_13
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(17859..18350)
DNA (492bp) protein (164aa)
transcription elongation factor GreA
seg (db=Seg db_id=seg from=61 to=72)
coiled-coil (db=Coil db_id=coil from=50 to=88 evalue=NA)
coiled-coil (db=Coil db_id=coil from=13 to=34 evalue=NA)
ACD3_50_14
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(18376..18621)
DNA (246bp) protein (82aa)
18376..18621 - (rbs_motif=TTAA rbs_spacer=10bp)
hypothetical protein Tax=ACD3
ACD3_50_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(18627..19358)
DNA (732bp) protein (244aa)
seg (db=Seg db_id=seg from=99 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
coiled-coil (db=Coil db_id=coil from=59 to=87 evalue=NA)
coiled-coil 59..87 Tax=ACD3
ACD3_50_16

Not on your lists

comp(19378..19929)
DNA (552bp) protein (184aa)
transcription termination/antitermination factor NusG
no description (db=Gene3D db_id=G3DSA:3.30.70.940 from=9 to=122 evalue=3.3e-27 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
N-utilization substance G protein NusG, N-terminal domain (db=superfamily db_id=SSF82679 from=9 to=122 evalue=3.6e-26 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
no description (db=HMMSmart db_id=SM00738 from=9 to=118 evalue=1.6e-21 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
ACD3_50_17

Not on your lists

comp(19956..20258)
DNA (303bp) protein (101aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
seg (db=Seg db_id=seg from=45 to=58)
seg (db=Seg db_id=seg from=28 to=39)
SecE (db=HMMPfam db_id=PF00584 from=2 to=49 evalue=3.3e-11 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
ACD3_50_18
ACD3, Gracilibacteria, Bacteria

Not on your lists

20317..20445
DNA (129bp) protein (43aa)
20317..20445 + (rbs_motif=TTAA rbs_spacer=13bp)
hypothetical protein Tax=ACD3
ACD3_50_19
unknown

Not on your lists

20464..21783
DNA (1320bp) protein (440aa)
DNA repair protein RadA
DNA repair protein radA n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J663_9BACL (db=UNIREF evalue=2.0e-77 bit_score=293.0 identity=39.57 coverage=92.5)
seg (db=Seg db_id=seg from=412 to=426)
seg (db=Seg db_id=seg from=158 to=179)
ACD3_50_20
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(22036..23649)
DNA (1614bp) protein (538aa)
glycoside hydrolase family protein (db=KEGG evalue=3.0e-08 bit_score=63.9 identity=26.53 coverage=22.3048327137546)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=109 to=364 evalue=5.4e-17 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, catalytic core)
no description (db=Gene3D db_id=G3DSA:3.20.20.80 from=81 to=325 evalue=5.1e-07 interpro_id=IPR013781 interpro_description=Glycoside hydrolase, subgroup, catalytic core GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: cation binding (GO:0043169))
breaks down cell wall of "algae" Jill Banfield (11/15/12)
family 26- putative plant degradation kelly wrighton (11/15/12)
plant degradation- family 26 kelly wrighton (11/15/12)
family 26- plant degradation kelly wrighton (11/15/12)
ACD3_50_21
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(23729..24400)
DNA (672bp) protein (224aa)
NUDIX hydrolase; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] (db=KEGG evalue=2.0e-16 bit_score=89.4 identity=25.12 coverage=88.3928571428571)
seg (db=Seg db_id=seg from=99 to=114)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=160 to=223 evalue=1.8e-11)
NUDIX hydrolase; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] alias=ACD3_C00050G00021,ACD3_1143.39084.65G0021,ACD3_1143.39084.65_21 id=50654 tax=ACD3 species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD3_50_22
unknown

Not on your lists

24635..29368
DNA (4734bp) protein (1578aa)
Fibronectin type III domain-containing protein n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MBI7_9PROT (db=UNIREF evalue=2.0e-27 bit_score=129.0 identity=32.67 coverage=16.7934093789607)
hypothetical protein
seg (db=Seg db_id=seg from=665 to=686)
seg (db=Seg db_id=seg from=1267 to=1282)
ACD3_50_23
ACD3, Gracilibacteria, Bacteria

Not on your lists

29449..29709
DNA (261bp) protein (87aa)
29449..29709 + (rbs_motif=TTAA rbs_spacer=9bp)
hypothetical protein Tax=ACD3
ACD3_50_24
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(29936..31972)
DNA (2037bp) protein (679aa)
seg (db=Seg db_id=seg from=312 to=324)
seg (db=Seg db_id=seg from=109 to=119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=12 to=33)
ACD3_50_25

Not on your lists

32274..32777
DNA (504bp) protein (168aa)
Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBP5_9FIRM (db=UNIREF evalue=4.0e-10 bit_score=67.0 identity=30.72 coverage=88.0952380952381)
R3H (db=HMMPfam db_id=PF01424 from=104 to=145 evalue=5.0e-05 interpro_id=IPR001374 interpro_description=Single-stranded nucleic acid binding R3H GO=Molecular Function: nucleic acid binding (GO:0003676))
R3H (db=ProfileScan db_id=PS51061 from=85 to=153 evalue=10.412 interpro_id=IPR001374 interpro_description=Single-stranded nucleic acid binding R3H GO=Molecular Function: nucleic acid binding (GO:0003676))
Uncharacterized protein {ECO:0000313|EMBL:EKE28781.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD3_50_26

Not on your lists

32791..33936
DNA (1146bp) protein (382aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Uncharacterized protein {ECO:0000313|EMBL:EKE28782.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD3_50_27
ACD3, Gracilibacteria, Bacteria

Not on your lists

34035..35609
DNA (1575bp) protein (525aa)
seg (db=Seg db_id=seg from=26 to=47)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=475 to=486)
Pili subunits (db=superfamily db_id=SSF54523 from=26 to=108 evalue=1.2e-19)
ACD3_50_28
ACD3, Gracilibacteria, Bacteria

Not on your lists

36039..37457
DNA (1419bp) protein (473aa)
chromosomal replication initiator protein DnaA
seg (db=Seg db_id=seg from=98 to=115)
DnaA: chromosomal replication initiator prot (db=HMMTigr db_id=TIGR00362 from=10 to=470 evalue=2.9e-129 interpro_id=IPR001957 interpro_description=Chromosomal replication control, initiator DnaA GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA replication origin binding (GO:0003688), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication initiation (GO:0006270), Biological Process: regulation of DNA replication (GO:0006275))
Bac_DnaA (db=HMMPfam db_id=PF00308 from=128 to=341 evalue=2.0e-77 interpro_id=IPR013317 interpro_description=Chromosomal replication control, initiator (DnaA)/regulator (Hda))
ACD3_50_29
unknown

Not on your lists

37457..38041
DNA (585bp) protein (195aa)
Thymidine kinase n=1 Tax=Enterobacter cloacae subsp. cloacae NCTC 9394 RepID=D6DQJ1_ENTCL (db=UNIREF evalue=2.0e-45 bit_score=184.0 identity=46.81 coverage=95.3846153846154)
thymidine kinase (EC:2.7.1.21)
Thymidine kinase (db=HMMPIR db_id=PIRSF035805 from=1 to=193 evalue=7.0e-53 interpro_id=IPR001267 interpro_description=Thymidine kinase GO=Molecular Function: thymidine kinase activity (GO:0004797), Molecular Function: ATP binding (GO:0005524))
TK (db=HMMPfam db_id=PF00265 from=3 to=185 evalue=4.1e-39 interpro_id=IPR001267 interpro_description=Thymidine kinase GO=Molecular Function: thymidine kinase activity (GO:0004797), Molecular Function: ATP binding (GO:0005524))
ACD3_50_30
ACD3, Gracilibacteria, Bacteria

Not on your lists

38059..38418
DNA (360bp) protein (120aa)
seg (db=Seg db_id=seg from=62 to=76)
seg 62..76 Tax=ACD3
Displaying items 1-30 of 31 in total

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