Alias: ACD3_1465.36320.65
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD3_56_1
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
3..227
|
3..227 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD3
|
|
ACD3_56_2
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
251..1660
|
seg (db=Seg db_id=seg from=223 to=234)
coiled-coil (db=Coil db_id=coil from=411 to=432 evalue=NA)
coiled-coil (db=Coil db_id=coil from=214 to=235 evalue=NA)
seg (db=Seg db_id=seg from=416 to=433)
|
|
ACD3_56_3
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
1691..2113
|
seg (db=Seg db_id=seg from=123 to=134)
seg 123..134 Tax=ACD3
|
|
ACD3_56_4
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
2206..3408
|
hypothetical protein (db=KEGG evalue=1.0e-17 bit_score=94.7 identity=26.57 coverage=93.2668329177057)
transmembrane_regions (db=TMHMM db_id=tmhmm from=40 to=62)
transmembrane_regions (db=TMHMM db_id=tmhmm from=362 to=380)
transmembrane_regions (db=TMHMM db_id=tmhmm from=336 to=358)
|
|
ACD3_56_5
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
3387..3884
|
hypothetical conserved membrane protein (db=KEGG evalue=4.0e-12 bit_score=73.6 identity=29.94 coverage=92.7710843373494)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
hypothetical conserved membrane protein alias=ACD3_C00056G00005,ACD3_1465.36320.65G0005,ACD3_1465.36320.65_5 id=50764 tax=ACD3 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
hypothetical conserved membrane protein Tax=ACD3
|
|
ACD3_56_6
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
comp(3957..4496)
|
bifunctional deaminase-reductase domain-containing protein
seg (db=Seg db_id=seg from=124 to=135)
Dihydrofolate reductase-like (db=superfamily db_id=SSF53597 from=3 to=177 evalue=7.0e-21)
no description (db=Gene3D db_id=G3DSA:3.40.430.10 from=3 to=168 evalue=4.9e-18)
|
|
ACD3_56_7
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
comp(4501..4746)
|
seg (db=Seg db_id=seg from=18 to=36)
seg (db=Seg db_id=seg from=3 to=14)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=37)
|
|
ACD3_56_8
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
5997..6980
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
transmembrane_regions 9..28 Tax=ACD3
|
|
ACD3_56_9
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
7001..7546
|
seg (db=Seg db_id=seg from=2 to=14)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=21 evalue=6.0)
seg 2..14 Tax=ACD3
|
|
ACD3_56_10
unknown
|
Not on your lists |
7840..8100
|
hypothetical protein
Putative uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U0G4_9RHOB (db=UNIREF evalue=1.0e-13 bit_score=79.0 identity=47.06 coverage=93.1034482758621)
Putative uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U0G4_9RHOB Tax=ACD3
|
|
ACD3_56_11
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
comp(8775..10646)
|
hypothetical protein
seg (db=Seg db_id=seg from=569 to=580)
seg (db=Seg db_id=seg from=359 to=372)
seg (db=Seg db_id=seg from=236 to=248)
|
|
ACD3_56_12
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
comp(10754..11020)
|
seg (db=Seg db_id=seg from=10 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
transmembrane_regions 10..32 Tax=ACD3
|
|
ACD3_56_13
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
comp(11129..12007)
|
seg (db=Seg db_id=seg from=236 to=249)
seg 236..249 Tax=ACD3
|
|
ACD3_56_14
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
12108..12902
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=121 to=140)
transmembrane_regions (db=TMHMM db_id=tmhmm from=145 to=164)
|
|
ACD3_56_15
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
12968..13741
|
seg (db=Seg db_id=seg from=178 to=191)
seg (db=Seg db_id=seg from=146 to=156)
transmembrane_regions (db=TMHMM db_id=tmhmm from=143 to=165)
transmembrane_regions (db=TMHMM db_id=tmhmm from=120 to=139)
|
|
ACD3_56_16
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
13813..14523
|
seg (db=Seg db_id=seg from=57 to=70)
seg 57..70 Tax=ACD3
|
|
ACD3_56_17
unknown
|
Not on your lists |
comp(14703..17285)
|
Heme d1 biosynthesis protein n=1 Tax=uncultured archaeon GZfos35D7 RepID=Q648Z0_9ARCH (db=UNIREF evalue=4.0e-21 bit_score=107.0 identity=27.11 coverage=28.9198606271777)
radical SAM domain-containing protein (db=KEGG evalue=1.0e-20 bit_score=105.0 identity=30.89 coverage=21.9512195121951)
seg (db=Seg db_id=seg from=420 to=430)
seg (db=Seg db_id=seg from=238 to=249)
|
arsenite methyltransferase or heme biosyn?
Jill Banfield
(11/15/12)
|
ACD3_56_18
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
comp(17257..17937)
|
pantetheine-phosphate adenylyltransferase (db=KEGG evalue=2.0e-10 bit_score=69.3 identity=24.44 coverage=77.5330396475771)
CoaE (db=HMMPfam db_id=PF01121 from=11 to=169 evalue=5.4e-12 interpro_id=IPR001977 interpro_description=Dephospho-CoA kinase GO=Molecular Function: dephospho-CoA kinase activity (GO:0004140), Molecular Function: ATP binding (GO:0005524), Biological Process: coenzyme A biosynthetic process (GO:0015937))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=188 evalue=2.3e-11)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=3 to=169 evalue=2.6e-06)
|
|
ACD3_56_19
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
comp(17925..19301)
|
Radical SAM domain protein
seg (db=Seg db_id=seg from=196 to=208)
seg (db=Seg db_id=seg from=216 to=227)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=161 to=389 evalue=9.6e-39)
|
|
ACD3_56_20
unknown
|
Not on your lists |
20047..20793
|
Transcriptional regulator, TrmB n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9V7_9BACT (db=UNIREF evalue=2.0e-12 bit_score=75.9 identity=32.76 coverage=46.1847389558233)
transcriptional regulator TrmB
TrmB (db=HMMPfam db_id=PF01978 from=12 to=74 evalue=1.1e-09 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=12 to=101 evalue=2.3e-06)
|
|
ACD3_56_21
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
20816..21838
|
carboxylate--amine ligase
seg (db=Seg db_id=seg from=209 to=224)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=67 to=328 evalue=4.8e-20)
ATP_GRASP (db=ProfileScan db_id=PS50975 from=72 to=324 evalue=14.511 interpro_id=IPR011761 interpro_description=ATP-grasp fold GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: ATP binding (GO:0005524))
|
|
ACD3_56_22
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
21882..22334
|
21882..22334 + (rbs_motif=TTAA rbs_spacer=9bp)
hypothetical protein Tax=ACD3
|
|
ACD3_56_23
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
22560..23408
|
seg (db=Seg db_id=seg from=152 to=178)
transmembrane_regions (db=TMHMM db_id=tmhmm from=262 to=280)
transmembrane_regions (db=TMHMM db_id=tmhmm from=227 to=249)
transmembrane_regions (db=TMHMM db_id=tmhmm from=190 to=212)
|
|
ACD3_56_24
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
23557..25566
|
seg (db=Seg db_id=seg from=350 to=370)
seg (db=Seg db_id=seg from=380 to=391)
seg 350..370 Tax=ACD3
|
|
ACD3_56_25
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
comp(25710..26921)
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=8 to=13)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=179 to=401 evalue=8.6e-15 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TPR-like (db=superfamily db_id=SSF48452 from=179 to=290 evalue=1.0e-11)
|
|
ACD3_56_26
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
27246..27455
|
27246..27455 + (rbs_motif=TTAA rbs_spacer=6bp)
hypothetical protein Tax=ACD3
|
|
ACD3_56_27
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
27493..27939
|
seg (db=Seg db_id=seg from=119 to=136)
seg 119..136 Tax=ACD3
hypothetical protein
|
|
ACD3_56_28
unknown
|
Not on your lists |
27986..29128
|
Putative uncharacterized protein n=1 Tax=Xylella fastidiosa subsp. sandyi Ann-1 RepID=Q3R1S3_XYLFA (db=UNIREF evalue=4.0e-13 bit_score=79.7 identity=21.52 coverage=78.740157480315)
hypothetical protein (db=KEGG evalue=1.0e-12 bit_score=78.2 identity=24.86 coverage=79.002624671916)
seg (db=Seg db_id=seg from=151 to=166)
Putative uncharacterized protein n=1 Tax=Xylella fastidiosa subsp. sandyi Ann-1 RepID=Q3R1S3_XYLFA Tax=ACD3
|
|
ACD3_56_29
unknown
|
Not on your lists |
29246..30331
|
Putative uncharacterized protein n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K659_VIBPA (db=UNIREF evalue=1.0e-27 bit_score=127.0 identity=28.96 coverage=78.7292817679558)
hypothetical protein (db=KEGG evalue=8.0e-10 bit_score=68.6 identity=28.38 coverage=57.182320441989)
seg (db=Seg db_id=seg from=296 to=310)
coiled-coil (db=Coil db_id=coil from=38 to=62 evalue=NA)
|
|
ACD3_56_30
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
30677..31573
|
coiled-coil (db=Coil db_id=coil from=42 to=63 evalue=NA)
coiled-coil 42..63 Tax=ACD3
|