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ACD3_68

Alias: ACD3_948.24927.68

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_68_1
ACD3, Gracilibacteria, Bacteria

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397..13095
DNA (12699bp) protein (4233aa)
seg (db=Seg db_id=seg from=3123 to=3150)
seg (db=Seg db_id=seg from=3158 to=3172)
seg (db=Seg db_id=seg from=3262 to=3274)
seg (db=Seg db_id=seg from=3384 to=3399)
ACD3_68_2
unknown

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13098..13664
DNA (567bp) protein (189aa)
M22 family O-sialoglycoprotein endopeptidase n=1 Tax=Oribacterium sinus F0268 RepID=C2KX74_9FIRM (db=UNIREF evalue=6.0e-08 bit_score=60.5 identity=27.49 coverage=87.3015873015873)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=1 to=107 evalue=7.4e-11)
Peptidase_M22 (db=HMMPfam db_id=PF00814 from=44 to=92 evalue=1.1e-05 interpro_id=IPR000905 interpro_description=Peptidase M22, glycoprotease GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508))
M22 family O-sialoglycoprotein endopeptidase n=1 Tax=Oribacterium sinus F0268 RepID=C2KX74_9FIRM Tax=ACD3
ACD3_68_3
ACD3, Gracilibacteria, Bacteria

Not on your lists

13685..14206
DNA (522bp) protein (174aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
DUF304 (db=HMMPfam db_id=PF03703 from=88 to=154 evalue=0.00012 interpro_id=IPR005182 interpro_description=Protein of unknown function DUF304, transmembrane flanked domain, bacterial)
transmembrane_regions 56..78 Tax=ACD3
ACD3_68_4
ACD3, Gracilibacteria, Bacteria

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14301..15206
DNA (906bp) protein (302aa)
hypothetical protein
no description (db=Gene3D db_id=G3DSA:3.50.50.60 from=112 to=228 evalue=2.6e-29)
PNDRDTASEII (db=FPrintScan db_id=PR00469 from=138 to=162 evalue=1.8e-25 interpro_id=IPR000103 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class-II GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
PNDRDTASEII (db=FPrintScan db_id=PR00469 from=123 to=135 evalue=1.8e-25 interpro_id=IPR000103 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class-II GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
ACD3_68_5

Not on your lists

15262..15930
DNA (669bp) protein (223aa)
winged helix family two component transcriptional regulator
Two-component response regulator n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8N4_9GAMM (db=UNIREF evalue=9.0e-42 bit_score=173.0 identity=42.6 coverage=97.3094170403588)
CheY-like (db=superfamily db_id=SSF52172 from=1 to=191 evalue=6.8e-36 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=2 to=112 evalue=8.0e-34 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD3_68_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

16115..16405
DNA (291bp) protein (97aa)
GIY-YIG nuclease
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=4 to=93 evalue=4.5e-17 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG (db=HMMPfam db_id=PF01541 from=6 to=80 evalue=6.6e-07 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
exci/endonuclease; K07461 putative endonuclease alias=ACD3_C00068G00006,ACD3_948.24927.68G0006,ACD3_948.24927.68_6 id=50915 tax=ACD3 species=Bermanella marisrubri genus=Bermanella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD3_68_7
ACD3, Gracilibacteria, Bacteria

Not on your lists

16558..17895
DNA (1338bp) protein (446aa)
two-component system signal transduction histidine kinase (EC:2.7.13.3)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=152 to=174)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=2 to=445 evalue=3.6e-39)
ACD3_68_8
ACD3, Gracilibacteria, Bacteria

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comp(18174..18860)
DNA (687bp) protein (229aa)
seg (db=Seg db_id=seg from=23 to=36)
transmembrane_regions (db=TMHMM db_id=tmhmm from=181 to=203)
transmembrane_regions (db=TMHMM db_id=tmhmm from=149 to=171)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=136)
ACD3_68_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

20014..22344
DNA (2331bp) protein (777aa)
N-6 DNA Methylase family n=1 Tax=Aciduliprofundum boonei T469 RepID=B5IG66_ACIB4 (db=UNIREF evalue=0.0 bit_score=706.0 identity=49.74 coverage=96.010296010296)
N-6 DNA methylase
N-6 DNA methylase
seg (db=Seg db_id=seg from=601 to=615)
ACD3_68_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

22444..22734
DNA (291bp) protein (97aa)
seg (db=Seg db_id=seg from=79 to=90)
seg (db=Seg db_id=seg from=19 to=34)
seg 19..34 Tax=ACD3
ACD3_68_11
ACD3, Gracilibacteria, Bacteria

Not on your lists

23002..23400
DNA (399bp) protein (133aa)
RNA methylase family protein
DNA methylase N-4/N-6 domain protein n=7 Tax=Thermoanaerobacter RepID=D3T762_THEIA (db=UNIREF evalue=1.0e-39 bit_score=165.0 identity=57.89 coverage=98.4962406015038)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=132 evalue=1.2e-13)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=1 to=132 evalue=6.4e-09)
ACD3_68_12
ACD3, Gracilibacteria, Bacteria

Not on your lists

23718..24275
DNA (558bp) protein (186aa)
coiled-coil (db=Coil db_id=coil from=51 to=101 evalue=NA)
seg (db=Seg db_id=seg from=47 to=95)
seg (db=Seg db_id=seg from=122 to=133)
coiled-coil 51..101 Tax=ACD3
ACD3_68_13
ACD3, Gracilibacteria, Bacteria

Not on your lists


24463..24990
DNA (528bp) protein (176aa)
rplC; 50S ribosomal protein L3
Translation proteins (db=superfamily db_id=SSF50447 from=1 to=176 evalue=8.5e-38 interpro_id=IPR009000 interpro_description=Translation elongation/initiation factor/Ribosomal, beta-barrel)
50S RIBOSOMAL PROTEIN L3 (db=HMMPanther db_id=PTHR11229 from=1 to=176 evalue=3.0e-34)
Ribosomal_L3 (db=HMMPfam db_id=PF00297 from=65 to=175 evalue=3.2e-15 interpro_id=IPR000597 interpro_description=Ribosomal protein L3 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 13 items

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