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RAAC1_SR1_1

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Displaying items 1-30 of 1099 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RAAC1_SR1_1_1
Plasmodium reichenowi, Plasmodium, Haemosporida, Aconoidasida, Apicomplexa, Eukaryota

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comp(1..1200)
DNA (1200bp) protein (400aa)
MAEBL rbh
Zinc finger transcription factor, putative {ECO:0000313|EMBL:CDO65374.1}; TaxID=5854 species="Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laver
similar to MAEBL alias=RAAC1_SR1_1,RAAC1_SR1_C00001G00001 id=982092 tax=RAAC1_SR1 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown organism_group=SR1
seg (db=Seg db_id=seg from=14 to=23)
RAAC1_SR1_1_2
ACD80, SR1, Bacteria

Not on your lists

comp(1225..1515)
DNA (291bp) protein (97aa)
hypothetical protein
hypothetical protein Tax=ACD80
728..1018 - ( gc_cont=0.320)
RAAC1_SR1_1_3
GWA1_OD1_39_13_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

1946..2239
DNA (294bp) protein (98aa)
10 kDa chaperonin Tax=GWA1_OD1_39_13_partial
groES; 10 kDa chaperonin; K04078 chaperonin GroES alias=RAAC1_SR1_3,RAAC1_SR1_C00001G00003 id=982094 tax=RAAC1_SR1 species=Caldisericum exile genus=Caldisericum taxon_order=Caldisericales taxon_class=Caldisericia phylum=Caldiserica organism_group=SR1
hypothetical protein
no description (db=HMMSmart db_id=SM00883 from=6 to=97 evalue=3.3e-37 interpro_id=IPR020818 interpro_description=Chaperonin Cpn10 GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: protein folding (GO:0006457))
RAAC1_SR1_1_4
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

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2265..2414
DNA (150bp) protein (50aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=3 to=24 evalue=NA)
seg (db=Seg db_id=seg from=37 to=48)
RAAC1_SR1_1_5
ACD78, Gracilibacteria, Bacteria

Not on your lists

2452..4095
DNA (1644bp) protein (548aa)
60 kDa chaperonin n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=CH60_UNCTG (db=UNIREF evalue=9.6e-179 bit_score=632.5 identity=58.9 coverage=98.72262773722628)
rsd:TGRD_677 chaperonin Cpn60 ; K04077 chaperonin GroEL Tax=ACD78
hypothetical protein rbh
rsd:TGRD_677 chaperonin Cpn60 ; K04077 chaperonin GroEL alias=RAAC1_SR1_5,RAAC1_SR1_C00001G00005 id=982096 tax=RAAC1_SR1 species=uncultured Termite group 1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Elusimicrobia organism_group=SR1
RAAC1_SR1_1_6
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

comp(4141..5901)
DNA (1761bp) protein (587aa)
hypothetical protein rbh
coiled-coil (db=Coil db_id=coil from=435 to=456 evalue=NA)
coiled-coil (db=Coil db_id=coil from=484 to=512 evalue=NA)
seg (db=Seg db_id=seg from=161 to=170)
RAAC1_SR1_1_7
ACD80, SR1, Bacteria

Not on your lists

comp(6026..10282)
DNA (4257bp) protein (1419aa)
hypothetical protein rbh
putative secreted protein Tax=ACD80
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=1375 to=1397)
RAAC1_SR1_1_8
unknown

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10505..11056
DNA (552bp) protein (184aa)
Ribosome-recycling factor n=3 Tax=Lactobacillus RepID=C0WT42_LACBU Tax=ACD80
frr; ribosome recycling factor; K02838 ribosome recycling factor alias=RAAC1_SR1_8,RAAC1_SR1_C00001G00008 id=982099 tax=RAAC1_SR1 species=Riemerella anatipestifer genus=Riemerella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes organism_group=SR1
hypothetical protein rbh
RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF) (db=HMMPanther db_id=PTHR20982:SF3 from=3 to=183 evalue=5.5e-50)
RAAC1_SR1_1_9
ACD80, SR1, Bacteria

Not on your lists

11089..11880
DNA (792bp) protein (264aa)
Preprotein translocase subunit YidC n=4 Tax=Desulfitobacterium RepID=I4AEX5_9FIRM (db=UNIREF evalue=1.8e-26 bit_score=125.6 identity=34.1 coverage=84.0909090909091)
inner membrane protein OxaA; K03217 preprotein translocase subunit YidC Tax=ACD80
Preprotein translocase subunit YidC rbh
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
RAAC1_SR1_1_10
ACD80, SR1, Bacteria

Not on your lists

comp(11938..15075)
DNA (3138bp) protein (1046aa)
hypothetical protein rbh
coiled-coil 815..836 Tax=ACD80
coiled-coil (db=Coil db_id=coil from=787 to=826 evalue=NA)
coiled-coil (db=Coil db_id=coil from=951 to=979 evalue=NA)
RAAC1_SR1_1_11
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

comp(15102..15776)
DNA (675bp) protein (225aa)
hypothetical protein alias=RAAC1_SR1_11,RAAC1_SR1_C00001G00011 id=982102 tax=RAAC1_SR1 species=Plasmodium falciparum genus=Plasmodium taxon_order=Haemosporida taxon_class=Aconoidasida phylum=Apicomplexa organism_group=SR1
hypothetical protein rbh
coiled-coil (db=Coil db_id=coil from=25 to=46 evalue=NA)
coiled-coil (db=Coil db_id=coil from=122 to=151 evalue=NA)
RAAC1_SR1_1_12
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

comp(15778..16098)
DNA (321bp) protein (107aa)
hypothetical protein
seg (db=Seg db_id=seg from=74 to=84)
RAAC1_SR1_1_13
Trichomonas vaginalis, Trichomonas, Trichomonadida, Eukaryota

Not on your lists

comp(16101..16901)
DNA (801bp) protein (267aa)
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EAY12843.1}; TaxID=5722 species="Eukaryota; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas.;" source="Trichomonas vaginalis.;"
coiled-coil (db=Coil db_id=coil from=115 to=136 evalue=NA)
coiled-coil (db=Coil db_id=coil from=235 to=263 evalue=NA)
RAAC1_SR1_1_14
ACD80, SR1, Bacteria

Not on your lists

comp(17018..18400)
DNA (1383bp) protein (461aa)
Membrane protein n=2 Tax=unclassified Gammaproteobacteria RepID=A4A748_9GAMM (db=UNIREF evalue=1.5e-07 bit_score=63.5 identity=27.1 coverage=34.273318872017356)
transmembrane_regions 335..357 Tax=ACD80
Membrane protein rbh
transmembrane_regions (db=TMHMM db_id=tmhmm from=179 to=201)
RAAC1_SR1_1_15
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

18540..21146
DNA (2607bp) protein (869aa)
hypothetical protein rbh
coiled-coil (db=Coil db_id=coil from=27 to=62 evalue=NA)
seg (db=Seg db_id=seg from=34 to=51)
seg (db=Seg db_id=seg from=78 to=88)
RAAC1_SR1_1_16
Sneathia sp. Sn35, Sneathia, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

21225..22700
DNA (1476bp) protein (492aa)
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1069640 species="Bacteria; Fusobacteria; Fusobacteriales;
small GTP-binding protein; K03977 GTP-binding protein alias=RAAC1_SR1_16,RAAC1_SR1_C00001G00016 id=982107 tax=RAAC1_SR1 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi organism_group=SR1
hypothetical protein rbh
GTPase_EngA: ribosome-associated GTPase E (db=HMMTigr db_id=TIGR03594 from=1 to=444 evalue=1.5e-102 interpro_id=IPR016484 interpro_description=GTP-binding protein EngA GO=Molecular Function: GTP binding (GO:0005525))
RAAC1_SR1_1_17
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22722..23714
DNA (993bp) protein (331aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synth
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein alias=RAAC1_SR1_17,RAAC1_SR1_C00001G00017 id=982108 tax=RAAC1_SR1 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=SR1
hypothetical protein rbh
Translation factor, SUA5 type (db=HMMPIR db_id=PIRSF004930 from=3 to=328 evalue=1.5e-91 interpro_id=IPR010923 interpro_description=Translation factor, SUA5 type)
RAAC1_SR1_1_18
R_KAZAN_48_13, Kazan, Bacteria

Not on your lists

23750..24190
DNA (441bp) protein (147aa)
lipoprotein signal peptidase (EC:3.4.23.36) Tax=RIFCSPLOWO2_01_FULL_KAZAN_48_13_curated
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=52 to=74)
RAAC1_SR1_1_19
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

24238..24555
DNA (318bp) protein (106aa)
hypothetical protein
(db=HMMPfam db_id=PF11325 from=5 to=88 evalue=1.5e-14 interpro_id=IPR021474 interpro_description=Protein of unknown function DUF3127)
RAAC1_SR1_1_20
ACD80, SR1, Bacteria

Not on your lists

comp(24605..25732)
DNA (1128bp) protein (376aa)
UDP-Glycosyltransferase/glycogen phosphorylase Tax=ACD80
group 1 glycosyl transferase alias=RAAC1_SR1_20,RAAC1_SR1_C00001G00020 id=982113 tax=RAAC1_SR1 species=Shewanella halifaxensis genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=SR1
group 1 glycosyl transferase rbh
seg (db=Seg db_id=seg from=142 to=151)
RAAC1_SR1_1_21
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

comp(25747..26370)
DNA (624bp) protein (208aa)
hypothetical protein rbh
seg (db=Seg db_id=seg from=138 to=151)
RAAC1_SR1_1_22
ACD80, SR1, Bacteria

Not on your lists

comp(26383..27075)
DNA (693bp) protein (231aa)
trmD; tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine-N1-)-methyltransferase [EC:2.1.1.31] Tax=ACD80
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] alias=RAAC1_SR1_22,RAAC1_SR1_C00001G00022 id=982116 tax=RAAC1_SR1 species=unknown genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes organism_group=SR1
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.228) rbh
(db=HMMPfam db_id=PF01746 from=24 to=224 evalue=2.7e-39 interpro_id=IPR016009 interpro_description=tRNA (guanine-N1-)-methyltransferase)
RAAC1_SR1_1_23

Not on your lists

comp(27094..27726)
DNA (633bp) protein (211aa)
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD25368.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
seg (db=Seg db_id=seg from=3 to=17)
seg (db=Seg db_id=seg from=46 to=62)
RAAC1_SR1_1_24
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

27850..28137
DNA (288bp) protein (96aa)
hypothetical protein
seg (db=Seg db_id=seg from=53 to=67)
RAAC1_SR1_1_T25
unknown

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28248..28321
DNA (74bp)
transferRNA
RAAC1_SR1_1_T26
unknown

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28344..28415
DNA (72bp)
transferRNA
RAAC1_SR1_1_T27
unknown

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28429..28502
DNA (74bp)
transferRNA
RAAC1_SR1_1_25
ACD80, SR1, Bacteria

Not on your lists

28730..29908
DNA (1179bp) protein (393aa)
cow:Calow_0656 translation elongation factor tu (EC:2.7.7.4); K02358 elongation factor EF-Tu [EC:3.6.5.3] Tax=ACD80
cow:Calow_0656 translation elongation factor tu (EC:2.7.7.4); K02358 elongation factor Tu alias=RAAC1_SR1_25,RAAC1_SR1_C00001G00025 id=982122 tax=RAAC1_SR1 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae organism_group=SR1
Elongation factor Tu n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFW5_THEYD (db=UNIREF evalue=5.1e-158 bit_score=563.1 identity=70.9 coverage=98.9821882951654)
hypothetical protein rbh
RAAC1_SR1_1_26

Not on your lists


29988..30335
DNA (348bp) protein (116aa)
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 alias=RAAC1_SR1_26,RAAC1_SR1_C00001G00026 id=982127 tax=RAAC1_SR1 species=Clostridium methylpentosum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=SR1
hypothetical protein
seg (db=Seg db_id=seg from=2 to=23)
RAAC1_SR1_1_27
ACD80, SR1, Bacteria

Not on your lists


30376..30978
DNA (603bp) protein (201aa)
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=ACD80
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 alias=RAAC1_SR1_27,RAAC1_SR1_C00001G00027 id=982129 tax=RAAC1_SR1 species=Marinitoga piezophila genus=Marinitoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae organism_group=SR1
hypothetical protein rbh
seg (db=Seg db_id=seg from=48 to=69)
Displaying items 1-30 of 1099 in total

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