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RifSed_csp2_19ft_3_scaffold_5176

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_19ft_3_scaffold_5176_1
unknown

Not on your lists

1..504
DNA (504bp) protein (168aa)

This feature has no annotations

RifSed_csp2_19ft_3_scaffold_5176_2
GWA2_OD1_37_10, Parcubacteria, Bacteria

Not on your lists

537..1121
DNA (585bp) protein (195aa)
Secreted protein {ECO:0000313|EMBL:KKQ23470.1}; TaxID=1618810 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_37_10.;"
seg 6..34 id=23121 bin=ACD22 species=ACD22 genus=ACD22 taxon_order=ACD22 taxon_class=ACD22 phylum=WWE3 tax=ACD22 organism_group=WWE3 organism_desc=WWE3
RifSed_csp2_19ft_3_scaffold_5176_3
R_Omnitrophica_45_10b, Omnitrophica, Bacteria

Not on your lists

1135..1674
DNA (540bp) protein (180aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQD7_KORVE
tRNA/rRNA methyltransferase SpoU
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_45_10b_curated
RifSed_csp2_19ft_3_scaffold_5176_4
unknown

Not on your lists

1694..1957
DNA (264bp) protein (88aa)

This feature has no annotations

RifSed_csp2_19ft_3_scaffold_5176_5
RBG_16_OP11_44_10_curated, Microgenomates, Bacteria

Not on your lists

1954..2514
DNA (561bp) protein (187aa)
Cobalamin adenosyltransferase n=1 Tax=Thermus sp. CCB_US3_UF1 RepID=G8NCK0_9DEIN
Cobalamin adenosyltransferase
Tax=RBG_16_OP11_44_10_curated
RifSed_csp2_19ft_3_scaffold_5176_6
unknown

Not on your lists

2585..2707
DNA (123bp) protein (41aa)

This feature has no annotations

RifSed_csp2_19ft_3_scaffold_5176_7
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

2743..3657
DNA (915bp) protein (305aa)
Catalytic Domain Of MutyY n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L504_THERP
Catalytic Domain Of MutyY
Catalytic Domain Of MutyY {ECO:0000313|EMBL:ACM06457.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
RifSed_csp2_19ft_3_scaffold_5176_8
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3904..5577
DNA (1674bp) protein (558aa)
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein id=4345521 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_19ft_3_scaffold_5176_9
R_OD1_Uhrbacteria_49_11, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

5574..6440
DNA (867bp) protein (289aa)
hypothetical protein id=5801657 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
2-oxoacid:ferredoxin oxidoreductase subunit beta
Tax=RIFCSPLOWO2_02_FULL_OD1_Uhrbacteria_49_11_curated
RifSed_csp2_19ft_3_scaffold_5176_10
RBG_13_OP11_40_7b_curated, Microgenomates, Bacteria

Not on your lists

comp(6442..6861)
DNA (420bp) protein (140aa)
DNA-binding response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP id=5084402 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
hypothetical protein
Tax=RBG_13_OP11_40_7b_curated
RifSed_csp2_19ft_3_scaffold_5176_11
RBG_19FT_COMBO_OP11_39_10_curated, Microgenomates, Bacteria

Not on your lists

7007..7501
DNA (495bp) protein (165aa)
Transcriptional regulator, rrf2 family n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TFA3_HELMI
transcriptional regulator, rrf2 family
Tax=RBG_19FT_COMBO_OP11_39_10_curated
RifSed_csp2_19ft_3_scaffold_5176_12
RBG_16_OP11_Curtissbacteria_39_7_curated, Curtissbacteria, Microgenomates, Bacteria

Not on your lists

7530..8114
DNA (585bp) protein (195aa)
DEAD/DEAH box helicase domain protein n=3 Tax=Desulfovibrio vulgaris RepID=E3IMX0_DESVR id=5087620 bin=OP11_3 species=Desulfovibrio vulgaris genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=OP11_3 organism_group=OP11 (Microgenomates) organism_desc=Complete genome
DEAD/DEAH box helicase
Tax=RBG_16_OP11_Curtissbacteria_39_7_curated
RifSed_csp2_19ft_3_scaffold_5176_13
GWB1_OD1_40_14, Parcubacteria, Bacteria

Not on your lists

8130..8369
DNA (240bp) protein (80aa)
ferredoxin n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B30A29
Uncharacterized protein {ECO:0000313|EMBL:KKR46371.1}; TaxID=1618865 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_40_14.;"
hypothetical protein
RifSed_csp2_19ft_3_scaffold_5176_14
R_OD1_Uhrbacteria_49_11, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

8393..8995
DNA (603bp) protein (201aa)
Superoxide dismutase id=1250376 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
manganese/iron superoxide dismutase
Tax=RIFCSPLOWO2_02_FULL_OD1_Uhrbacteria_49_11_curated
RifSed_csp2_19ft_3_scaffold_5176_15
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8976..9746
DNA (771bp) protein (257aa)
FeS assembly ATPase SufC n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R4J3_ISOPI
FeS assembly ATPase SufC
FeS assembly ATPase SufC {ECO:0000313|EMBL:ADV63788.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
RifSed_csp2_19ft_3_scaffold_5176_16
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

9743..11146
DNA (1404bp) protein (468aa)
FeS assembly protein SufB n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCT9_THET1
FeS assembly protein SufB
FeS assembly protein SufB {ECO:0000313|EMBL:ACZ42604.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
RifSed_csp2_19ft_3_scaffold_5176_17

Not on your lists

11146..12345
DNA (1200bp) protein (400aa)
Fe-S cluster assembly protein SufD id=5800092 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Fe-S cluster assembly protein SufD {ECO:0000313|EMBL:AJF61423.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
FeS assembly protein SufD
RifSed_csp2_19ft_3_scaffold_5176_18
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

12323..13561
DNA (1239bp) protein (413aa)
sufS; cysteine desulfurase/selenocysteine lyase (EC:2.8.1.7)
Cysteine desulfurase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MQ35_9BACT
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
RifSed_csp2_19ft_3_scaffold_5176_19
GWB1_OP11_40_7, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

13561..13944
DNA (384bp) protein (128aa)
SUF system FeS assembly protein, NifU family n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCT6_THET1
Uncharacterized protein {ECO:0000313|EMBL:KKR71465.1}; TaxID=1618482 species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWB1_40_7.;"
NifU family SUF system FeS assembly protein
RifSed_csp2_19ft_3_scaffold_5176_20
R_NC10_66_22, NC10, Bacteria

Not on your lists

13962..14597
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N446_9ARCH
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
RifSed_csp2_19ft_3_scaffold_5176_21
Caldisericum exile, Caldisericum, Caldisericales, Caldisericia, Caldiserica, Bacteria

Not on your lists

14594..15247
DNA (654bp) protein (218aa)
putative DNA glycosylase/AP lyase (EC:3.2.2.- 4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=511051 species="Bacteria; Caldiserica; Caldisericia; Caldisericales; Caldisericaceae; Caldisericum.;" source="Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01).;"
Endonuclease III n=1 Tax=Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) RepID=I0GKX8_CALEA
RifSed_csp2_19ft_3_scaffold_5176_22
unknown

Not on your lists

15302..15469
DNA (168bp) protein (56aa)

This feature has no annotations

RifSed_csp2_19ft_3_scaffold_5176_23
R_OP11_Gottesmanbacteria_39_10, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

15506..16468
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AU64_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OP11_Gottesmanbacteria_39_10_curated
RifSed_csp2_19ft_3_scaffold_5176_24
GWA1_OP11_39_8_plus, Woesebacteria, Microgenomates, Bacteria

Not on your lists

16513..17199
DNA (687bp) protein (229aa)
Rhomboid family protein {ECO:0000313|EMBL:KKR30609.1}; TaxID=1618552 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA1_39_8.;"
rhomboid family protein id=5085195 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
rhomboid family protein
RifSed_csp2_19ft_3_scaffold_5176_25
unknown

Not on your lists

17298..17687
DNA (390bp) protein (130aa)

This feature has no annotations

RifSed_csp2_19ft_3_scaffold_5176_26
RBG_13_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

17751..18272
DNA (522bp) protein (174aa)
hypothetical protein; K06974 id=1250605 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Zn-dependent peptidase
Tax=RBG_13_Chloroflexi_50_10_curated
RifSed_csp2_19ft_3_scaffold_5176_27

Not on your lists

18335..19132
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NKX3_ROSCS
Uncharacterized protein {ECO:0000313|EMBL:KKM68858.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
RifSed_csp2_19ft_3_scaffold_5176_28
unknown

Not on your lists

19660..19785
DNA (126bp) protein (42aa)

This feature has no annotations

RifSed_csp2_19ft_3_scaffold_5176_29
GWB1_OP11_38_5_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

19813..21693
DNA (1881bp) protein (627aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GF65_9DELT id=35817 bin=ACD30 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=ACD30 organism_group=OP11 (Microgenomates) organism_desc=OP11 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKQ74767.1}; TaxID=1618569 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWB1_38_5b.;"
hypothetical protein
RifSed_csp2_19ft_3_scaffold_5176_30

Not on your lists

21852..22922
DNA (1071bp) protein (357aa)
Major facilitator superfamily protein id=2565850 bin=GWC1_KAZAN_52_13 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_KAZAN_52_13 organism_group=Kazan
Major facilitator superfamily protein {ECO:0000313|EMBL:KKW25113.1}; TaxID=1620413 species="Bacteria.;" source="bacterium GW2011_GWC1_52_13.;"
Displaying items 1-30 of 51 in total

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