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RifSed_csp2_19ft_3_scaffold_12041

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_19ft_3_scaffold_12041_1
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

Not on your lists

3..356
DNA (354bp) protein (118aa)
DNA mismatch repair protein MutS n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LGK0_9BACT
mutS; DNA mismatch repair protein MutS
Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
RifSed_csp2_19ft_3_scaffold_12041_2
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

363..2120
DNA (1758bp) protein (586aa)
abi:Aboo_0157 DNA mismatch repair protein MutL; K03572 DNA mismatch repair protein MutL id=27795 bin=ACD24 species=ACD24 genus=ACD24 taxon_order=ACD24 taxon_class=ACD24 phylum=WWE3 tax=ACD24 organism_group=WWE3 organism_desc=WWE3
DNA mismatch repair protein MutL rbh
Tax=RBG_16_WWE3_37_10_curated
RifSed_csp2_19ft_3_scaffold_12041_3
RBG_13_OP11_Curtissbacteria_35_7_curated, Curtissbacteria, Microgenomates, Bacteria

Not on your lists


comp(2138..2539)
DNA (402bp) protein (134aa)
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 id=86004 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
Ribosomal protein S9
Tax=RBG_13_OP11_Curtissbacteria_35_7_curated
RifSed_csp2_19ft_3_scaffold_12041_4
R_OP11_Curtissbacteria_41_18, Curtissbacteria, Microgenomates, Bacteria

Not on your lists


comp(2523..2951)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=1 Tax=uncultured bacterium RepID=K2DLS2_9BACT
rplM; 50S ribosomal protein L13
Tax=RIFCSPLOWO2_01_FULL_OP11_Curtissbacteria_41_18_curated
RifSed_csp2_19ft_3_scaffold_12041_5
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists


comp(2958..3434)
DNA (477bp) protein (159aa)
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 id=15191831 bin=GWC1_OP11_49_16_COMPLETE species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
rplQ; 50S ribosomal protein L17
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_19ft_3_scaffold_12041_6
R_OP11_Gottesmanbacteria_39_12b, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(3418..4338)
DNA (921bp) protein (307aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] id=29034 bin=ACD24 species=ACD24 genus=ACD24 taxon_order=ACD24 taxon_class=ACD24 phylum=WWE3 tax=ACD24 organism_group=WWE3 organism_desc=WWE3
DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6)
Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_39_12b_curated
RifSed_csp2_19ft_3_scaffold_12041_7

Not on your lists


comp(4366..4863)
DNA (498bp) protein (166aa)
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 id=5085239 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
30S ribosomal protein S4, small subunit ribosomal protein S4 {ECO:0000313|EMBL:KKS96036.1}; TaxID=1618443 species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWA2_43_14.;"
30S ribosomal protein S4
RifSed_csp2_19ft_3_scaffold_12041_8
R_OP11_Gottesmanbacteria_49_10, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists


comp(4973..5431)
DNA (459bp) protein (153aa)
Ribosomal protein S11 id=4799392 bin=GWC2_Methylomirabilis_70_24 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
30S ribosomal protein S11
Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_49_10_curated
RifSed_csp2_19ft_3_scaffold_12041_9
R_OP11_Curtissbacteria_41_44, Curtissbacteria, Microgenomates, Bacteria

Not on your lists


comp(5433..5867)
DNA (435bp) protein (145aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=85271 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
30S ribosomal protein S13
Tax=RIFCSPHIGHO2_01_FULL_OP11_Curtissbacteria_41_44_curated
RifSed_csp2_19ft_3_scaffold_12041_10
RIFOXYC2_FULL_WOR_2_45_15_curated, WOR-2, Bacteria

Not on your lists

comp(5983..6201)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 id=2002100 bin=GWB2_CP_45_9 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
infA; translation initiation factor IF-1
Tax=RIFOXYC2_FULL_WOR_2_45_15_curated
RifSed_csp2_19ft_3_scaffold_12041_11

Not on your lists

comp(6258..6479)
DNA (222bp) protein (74aa)
map; methionine aminopeptidase, type I (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] id=42507 bin=ACD37 species=ACD37 genus=ACD37 taxon_order=ACD37 taxon_class=ACD37 phylum=OP11 tax=ACD37 organism_group=OP11 (Microgenomates) organism_desc=OP11
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
RifSed_csp2_19ft_3_scaffold_12041_12
R_WWE3_48_15, WWE3, Bacteria

Not on your lists

comp(6506..6910)
DNA (405bp) protein (135aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=uncultured bacterium RepID=K2BT26_9BACT
Tax=RIFCSPHIGHO2_01_FULL_WWE3_48_15_curated
RifSed_csp2_19ft_3_scaffold_12041_13
R_OP11_Daviesbacteria_36_13, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(6949..7500)
DNA (552bp) protein (184aa)
adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K230_9MICO
Tax=RIFCSPHIGHO2_02_FULL_OP11_Daviesbacteria_36_13_curated
RifSed_csp2_19ft_3_scaffold_12041_14
RBG_19FT_COMBO_OP11_39_10_curated, Microgenomates, Bacteria

Not on your lists


comp(7503..8792)
DNA (1290bp) protein (430aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5085232 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
hypothetical protein
Tax=RBG_19FT_COMBO_OP11_39_10_curated
RifSed_csp2_19ft_3_scaffold_12041_15
GWB1_OP11_45_5_curated, Microgenomates, Bacteria

Not on your lists


comp(8789..9832)
DNA (1044bp) protein (348aa)
30S ribosomal protein S5 n=3 Tax=Mycoplasma putrefaciens RepID=G2RYT2_MYCPK id=5087670 bin=OP11_3 species=Mycoplasma putrefaciens genus=Mycoplasma taxon_order=Mycoplasmatales taxon_class=Mollicutes phylum=Tenericutes tax=OP11_3 organism_group=OP11 (Microgenomates) organism_desc=Complete genome
30S ribosomal protein S5
Tax=GWB1_OP11_45_5_curated
RifSed_csp2_19ft_3_scaffold_12041_16
R_OP11_Curtissbacteria_41_11, Curtissbacteria, Microgenomates, Bacteria

Not on your lists


comp(9847..10212)
DNA (366bp) protein (122aa)
50S ribosomal protein L18 n=6 Tax=Thermotoga RepID=RL18_THEMA
rplR; 50S ribosomal protein L18
Tax=RIFCSPHIGHO2_01_FULL_OP11_Curtissbacteria_41_11_curated
RifSed_csp2_19ft_3_scaffold_12041_17
unknown

Not on your lists

comp(10209..10298)
DNA (90bp) protein (30aa)

This feature has no annotations

Displaying 17 items

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