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ACD40_19

Alias: ACD40_19625.23708.15

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD40_19_1

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2..1783
DNA (1782bp) protein (594aa)
GDP-mannose 4,6 dehydratase ISS
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=1 to=15)
TPR repeat-containing protein alias=ACD40_19625.23708.15G0001,ACD40_19625.23708.15_1,ACD40_C00019G00001 id=51514 tax=ACD40 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi organism_group=OP11 organism_desc=OP11
ACD40_19_2

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1801..2511
DNA (711bp) protein (237aa)
rplY; 50S ribosomal protein L25
seg (db=Seg db_id=seg from=209 to=226)
seg (db=Seg db_id=seg from=184 to=207)
Ribosomal protein L25-like (db=superfamily db_id=SSF50715 from=2 to=193 evalue=5.0e-42 interpro_id=IPR011035 interpro_description=Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO=Biological Process: translation (GO:0006412))
ACD40_19_3

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comp(2495..2962)
DNA (468bp) protein (156aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=43)
TPR (db=ProfileScan db_id=PS50005 from=117 to=150 evalue=10.62 interpro_id=IPR019734 interpro_description=Tetratricopeptide repeat)
TPR_REGION (db=ProfileScan db_id=PS50293 from=117 to=150 evalue=10.675 interpro_id=IPR013026 interpro_description=Tetratricopeptide repeat-containing)
Uncharacterized protein {ECO:0000313|EMBL:EKD80552.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD40_19_4

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2999..3943
DNA (945bp) protein (315aa)
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I1S8_CLOCE (db=UNIREF evalue=1.0e-32 bit_score=144.0 identity=32.83 coverage=99.0476190476191)
seg (db=Seg db_id=seg from=217 to=228)
coiled-coil (db=Coil db_id=coil from=287 to=308 evalue=NA)
The D-2- hydroxy-acid dehydrogenase family also includes D-lactate dehydrogenase (LDH; EC 1.1.1.28) and malate dehydrogenase (MDH; EC 1.1.1.37), which catalyze the conversion of lactate to pyruvate and malate (Mal) to oxalacetate (OAA), respectively Jill Banfield (11/15/12)
ACD40_19_5

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comp(3927..4301)
DNA (375bp) protein (125aa)
PilT protein domain-containing protein
PilT protein domain protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RAY3_AMMDK (db=UNIREF evalue=7.0e-11 bit_score=69.7 identity=33.59 coverage=95.2)
PIN domain-like (db=superfamily db_id=SSF88723 from=4 to=120 evalue=2.7e-14)
no description (db=Gene3D db_id=G3DSA:3.40.50.1010 from=2 to=117 evalue=2.4e-12)
ACD40_19_6

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comp(4291..4539)
DNA (249bp) protein (83aa)
4291..4539 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD80555.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD40_19_7

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comp(4571..5710)
DNA (1140bp) protein (380aa)
Putative uncharacterized protein n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NR39_9DELT (db=UNIREF evalue=2.0e-113 bit_score=413.0 identity=53.85 coverage=98.9473684210526)
hypothetical protein
hypothetical protein
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=11 to=222 evalue=6.3e-12)
ACD40_19_8

Not on your lists

comp(5760..6563)
DNA (804bp) protein (268aa)
transcriptional regulator, TrmB (db=KEGG evalue=4.0e-08 bit_score=62.0 identity=26.54 coverage=89.1791044776119)
coiled-coil (db=Coil db_id=coil from=73 to=101 evalue=NA)
TrmB (db=HMMPfam db_id=PF01978 from=6 to=72 evalue=1.3e-09 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=2 to=100 evalue=3.4e-08)
ACD40_19_9
GWA2_OP11_46_16_partial, Microgenomates, Bacteria

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6624..7052
DNA (429bp) protein (143aa)
6624..7052 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=GWA2_OP11_46_16_partial
ACD40_19_10

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comp(7126..8940)
DNA (1815bp) protein (605aa)
thrB; homoserine kinase (EC:2.7.1.39); K02204 homoserine kinase type II [EC:2.7.1.39] (db=KEGG evalue=4.0e-12 bit_score=77.0 identity=26.3 coverage=43.3057851239669)
seg (db=Seg db_id=seg from=156 to=169)
coiled-coil (db=Coil db_id=coil from=81 to=102 evalue=NA)
Protein kinase-like (PK-like) (db=superfamily db_id=SSF56112 from=301 to=544 evalue=7.2e-20 interpro_id=IPR011009 interpro_description=Protein kinase-like domain)
ACD40_19_11
GWA2_OP11_46_16_partial, Microgenomates, Bacteria

Not on your lists

comp(9521..10381)
DNA (861bp) protein (287aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=145 to=162)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
transmembrane_regions (db=TMHMM db_id=tmhmm from=268 to=285)
transmembrane_regions (db=TMHMM db_id=tmhmm from=237 to=259)
ACD40_19_12
GWA2_OP11_46_16_partial, Microgenomates, Bacteria

Not on your lists

comp(10449..11435)
DNA (987bp) protein (329aa)
Fic n=1 Tax=Rickettsia felis RepID=Q4UJY0_RICFE (db=UNIREF evalue=3.0e-88 bit_score=328.0 identity=51.7 coverage=96.048632218845)
fic; Fic family protein
fic; Fic family protein
gb def: Huntingtin interacting protein E-like protein (db=HMMPanther db_id=PTHR13504:SF9 from=5 to=246 evalue=9.0e-54)
ACD40_19_13
GWA2_OP11_46_16_partial, Microgenomates, Bacteria

Not on your lists

comp(11469..11684)
DNA (216bp) protein (72aa)
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (db=superfamily db_id=SSF54593 from=1 to=50 evalue=1.2e-07)
Uncharacterized protein {ECO:0000313|EMBL:KKU25346.1}; TaxID=1618501 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWA2_46_16.;"
ACD40_19_14

Not on your lists

12034..12597
DNA (564bp) protein (188aa)
12034..12597 + (rbs_motif=ATA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD80537.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD40_19_15

Not on your lists

12617..12847
DNA (231bp) protein (77aa)
seg (db=Seg db_id=seg from=55 to=69)
Uncharacterized protein {ECO:0000313|EMBL:EKD80538.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD40_19_16

Not on your lists

comp(12850..13383)
DNA (534bp) protein (178aa)
hypothetical protein
Putative esterase n=1 Tax=Providencia rettgeri DSM 1131 RepID=D4BXD2_PRORE (db=UNIREF evalue=1.0e-11 bit_score=72.8 identity=35.36 coverage=98.314606741573)
seg (db=Seg db_id=seg from=72 to=85)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=1 to=177 evalue=5.4e-24)
ACD40_19_17
GWC2_OP11_45_8_partial, Microgenomates, Bacteria

Not on your lists

comp(13380..14564)
DNA (1185bp) protein (395aa)
sugar phosphate permease
transmembrane_regions (db=TMHMM db_id=tmhmm from=212 to=234)
seg (db=Seg db_id=seg from=139 to=150)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD40_19_18
GWC2_OP11_45_8_partial, Microgenomates, Bacteria

Not on your lists

comp(14551..15744)
DNA (1194bp) protein (398aa)
major facilitator superfamily MFS_1
transmembrane_regions (db=TMHMM db_id=tmhmm from=281 to=298)
transmembrane_regions (db=TMHMM db_id=tmhmm from=302 to=321)
transmembrane_regions (db=TMHMM db_id=tmhmm from=337 to=359)
ACD40_19_19
GWC2_OP11_45_8_partial, Microgenomates, Bacteria

Not on your lists

comp(15765..15968)
DNA (204bp) protein (68aa)
15765..15968 - (rbs_motif=None rbs_spacer=None)
Tax=GWC2_OP11_45_8_partial
ACD40_19_20
GWC2_OP11_45_8_partial, Microgenomates, Bacteria

Not on your lists

16072..16953
DNA (882bp) protein (294aa)
Transcriptional regulator, TrmB
TrmB (db=HMMPfam db_id=PF01978 from=11 to=82 evalue=2.3e-12 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=12 to=65 evalue=8.1e-06)
transcriptional regulator, TrmB alias=ACD40_19625.23708.15G0020,ACD40_19625.23708.15_20,ACD40_C00019G00020 id=51515 tax=ACD40 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria organism_group=OP11 organism_desc=OP11
ACD40_19_21

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comp(16936..17307)
DNA (372bp) protein (124aa)
16936..17307 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD80544.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD40_19_22

Not on your lists

17363..17878
DNA (516bp) protein (172aa)
NUDIX hydrolase n=1 Tax=Coraliomargarita akajimensis DSM 45221 RepID=D5EM70_CORAD (db=UNIREF evalue=3.0e-12 bit_score=74.3 identity=28.4 coverage=91.2790697674419)
NUDIX hydrolase (db=KEGG evalue=3.0e-12 bit_score=74.3 identity=28.4 coverage=91.2790697674419)
Nudix (db=superfamily db_id=SSF55811 from=4 to=165 evalue=3.1e-29 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=1 to=159 evalue=3.1e-18 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD40_19_23

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comp(17871..18800)
DNA (930bp) protein (310aa)
hypothetical protein
Valine--tRNA ligase n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BI95_9FIRM (db=UNIREF evalue=3.0e-59 bit_score=232.0 identity=43.88 coverage=89.0322580645161)
coiled-coil (db=Coil db_id=coil from=211 to=232 evalue=NA)
VALYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11946:SF5 from=45 to=308 evalue=1.1e-89 interpro_id=IPR002303 interpro_description=Valyl-tRNA synthetase, class Ia GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: valine-tRNA ligase activity (GO:0004832), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: valyl-tRNA aminoacylation (GO:0006438))
ACD40_19_24

Not on your lists

19359..19478
DNA (120bp) protein (40aa)
19359..19478 + (rbs_motif=ATA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD80532.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD40_19_25

Not on your lists

comp(19643..20062)
DNA (420bp) protein (140aa)
19643..20062 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD80533.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD40_19_26
GWC2_OP11_45_8_partial, Microgenomates, Bacteria

Not on your lists

comp(20206..21897)
DNA (1692bp) protein (564aa)
VanW family protein
VanW family protein n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8GBK0_CHLAD (db=UNIREF evalue=5.0e-52 bit_score=209.0 identity=29.77 coverage=95.3900709219858)
seg (db=Seg db_id=seg from=288 to=301)
seg (db=Seg db_id=seg from=196 to=211)
Members of this family include vancomycin resistance protein W (VanW). Genes encoding members of this family have been found in vancomycin resistance gene clusters vanB [1] and vanG [2]. The function of VanW is unknown. Jill Banfield (11/15/12)
ACD40_19_27
GWA2_OP11_46_16_partial, Microgenomates, Bacteria

Not on your lists

21916..23427
DNA (1512bp) protein (504aa)
family 1 extracellular solute-binding protein
Extracellular solute-binding protein, family 1 n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZC6_9BACL (db=UNIREF evalue=4.0e-23 bit_score=113.0 identity=28.09 coverage=56.9444444444444)
seg (db=Seg db_id=seg from=47 to=69)
seg (db=Seg db_id=seg from=82 to=104)
ACD40_19_28
GWC2_OP11_45_8_partial, Microgenomates, Bacteria

Not on your lists

23427..23744
DNA (318bp) protein (106aa)
seg (db=Seg db_id=seg from=78 to=96)
Uncharacterized protein Tax=GWC2_OP11_45_8_partial
Displaying 28 items

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