Alias: ACD40_103983.24544.14
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD40_41_1
GWA2_OP11_46_16_partial, Microgenomates, Bacteria
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Not on your lists |
comp(33..446)
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gspG; LspG precursor (Type II protein secretion LspG pseudopilin)
seg (db=Seg db_id=seg from=115 to=129)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=2 to=22 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
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ACD40_41_2
GWA2_OP11_46_16_partial, Microgenomates, Bacteria
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Not on your lists |
500..1282
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transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=29)
seg (db=Seg db_id=seg from=10 to=26)
seg (db=Seg db_id=seg from=140 to=150)
hypothetical protein Tax=GWA2_OP11_46_16_partial
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ACD40_41_3
uncultured bacterium, Bacteria
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Not on your lists |
1299..2324
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hypothetical protein
type IV pilus assembly protein PilM n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001743B82 (db=UNIREF evalue=3.0e-27 bit_score=126.0 identity=27.79 coverage=97.953216374269)
seg (db=Seg db_id=seg from=67 to=80)
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ACD40_41_4
GWA2_OP11_46_16_partial, Microgenomates, Bacteria
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Not on your lists |
2326..2616
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transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
seg (db=Seg db_id=seg from=35 to=40)
hypothetical protein Tax=GWA2_OP11_46_16_partial
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ACD40_41_5
uncultured bacterium, Bacteria
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Not on your lists |
2634..2978
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2634..2978 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD80790.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD40_41_6
uncultured bacterium, Bacteria
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Not on your lists |
2978..3700
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transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
Uncharacterized protein {ECO:0000313|EMBL:EKD80791.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD40_41_7
uncultured bacterium, Bacteria
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Not on your lists |
comp(3684..3995)
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RNA-binding domain-containing protein
seg (db=Seg db_id=seg from=77 to=97)
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=2 to=61 evalue=4.3e-07 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))
KH_1 (db=HMMPfam db_id=PF00013 from=33 to=64 evalue=1.7e-05 interpro_id=IPR018111 interpro_description=K Homology, type 1, subgroup GO=Molecular Function: RNA binding (GO:0003723))
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ACD40_41_8
GWA2_OP11_46_16_partial, Microgenomates, Bacteria
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Not on your lists |
comp(4005..4250)
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rpsP; 30S ribosomal protein S16
RIBOSOMAL_S16 (db=PatternScan db_id=PS00732 from=2 to=11 evalue=0.0 interpro_id=IPR020592 interpro_description=Ribosomal protein S16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S16: ribosomal protein S16 (db=HMMTigr db_id=TIGR00002 from=2 to=79 evalue=1.9e-19 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S16 (db=superfamily db_id=SSF54565 from=1 to=81 evalue=6.9e-19 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD40_41_9
GWA2_OP11_46_16_partial, Microgenomates, Bacteria
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Not on your lists |
comp(4264..4956)
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hypothetical protein
RNASE_3_1 (db=PatternScan db_id=PS00517 from=43 to=51 evalue=0.0 interpro_id=IPR000999 interpro_description=Ribonuclease III GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: RNA processing (GO:0006396))
RNaseIII: ribonuclease III (db=HMMTigr db_id=TIGR02191 from=8 to=227 evalue=2.2e-89 interpro_id=IPR011907 interpro_description=Ribonuclease III, bacterial GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: rRNA catabolic process (GO:0016075))
RIBONUCLEASE III (db=HMMPanther db_id=PTHR11207 from=15 to=227 evalue=9.5e-72)
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ACD40_41_10
uncultured bacterium, Bacteria
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Not on your lists |
comp(4953..5276)
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hypothetical protein
NusB (db=HMMPfam db_id=PF01029 from=32 to=100 evalue=7.8e-24 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
NusB-like (db=superfamily db_id=SSF48013 from=7 to=101 evalue=2.4e-22 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.940.10 from=8 to=100 evalue=6.3e-20 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
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ACD40_41_11
uncultured bacterium, Bacteria
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Not on your lists |
comp(5277..5426)
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Ribosomal_L32p (db=HMMPfam db_id=PF01783 from=4 to=47 evalue=6.2e-14 interpro_id=IPR002677 interpro_description=Ribosomal protein L32p GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
rpmF_bact: ribosomal protein L32 (db=HMMTigr db_id=TIGR01031 from=3 to=47 evalue=1.7e-09 interpro_id=IPR002677 interpro_description=Ribosomal protein L32p GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Zn-binding ribosomal proteins (db=superfamily db_id=SSF57829 from=3 to=47 evalue=3.9e-09 interpro_id=IPR011332 interpro_description=Ribosomal protein, zinc-binding domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Uncharacterized protein {ECO:0000313|EMBL:EKD80796.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD40_41_12
GWA2_OP11_46_16_partial, Microgenomates, Bacteria
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Not on your lists |
comp(5430..7370)
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recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7INI1_9CLOT (db=UNIREF evalue=1.0e-104 bit_score=384.0 identity=35.96 coverage=98.2998454404946)
seg (db=Seg db_id=seg from=479 to=494)
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ACD40_41_13
uncultured bacterium, Bacteria
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Not on your lists |
comp(7428..7529)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
Uncharacterized protein {ECO:0000313|EMBL:EKD80788.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD40_41_14
uncultured bacterium, Bacteria
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Not on your lists |
comp(7564..8145)
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tyrS; tyrosyl-tRNA synthetase
TYROSYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11766 from=1 to=193 evalue=5.9e-29 interpro_id=IPR002307 interpro_description=Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tyrosine-tRNA ligase activity (GO:0004831), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tyrosyl-tRNA aminoacylation (GO:0006437))
no description (db=Gene3D db_id=G3DSA:1.10.240.10 from=24 to=117 evalue=6.0e-22)
Nucleotidylyl transferase (db=superfamily db_id=SSF52374 from=1 to=148 evalue=2.1e-20)
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ACD40_41_15
uncultured bacterium, Bacteria
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Not on your lists |
8269..8691
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seg (db=Seg db_id=seg from=21 to=32)
Uncharacterized protein {ECO:0000313|EMBL:EKD80775.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD40_41_16
GWA2_OP11_46_16_partial, Microgenomates, Bacteria
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Not on your lists |
comp(8764..9156)
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seg (db=Seg db_id=seg from=107 to=123)
hypothetical protein Tax=GWA2_OP11_46_16_partial
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ACD40_41_17
uncultured bacterium, Bacteria
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Not on your lists |
9186..11744
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hypothetical protein
hypothetical protein
Penicillin-binding protein, 1A family n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NMB6_ROSCS (db=UNIREF evalue=3.0e-123 bit_score=446.0 identity=40.31 coverage=79.6014067995311)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
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ACD40_41_18
GWA2_OP11_46_16_partial, Microgenomates, Bacteria
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Not on your lists |
comp(11741..13585)
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phenylalanyl-tRNA synthetase subunit beta
seg (db=Seg db_id=seg from=190 to=213)
seg (db=Seg db_id=seg from=598 to=614)
no description (db=HMMSmart db_id=SM00873 from=97 to=270 evalue=9.8e-53 interpro_id=IPR005146 interpro_description=B3/B4 tRNA-binding domain GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826), Biological Process: translation (GO:0006412))
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ACD40_41_19
uncultured bacterium, Bacteria
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Not on your lists |
comp(13582..15324)
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Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 PF43_9FIRM">RepID=B0PF43_9FIRM (db=UNIREF evalue=8.0e-81 bit_score=305.0 identity=42.51 coverage=56.4543889845095)
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=256 to=577 evalue=5.9e-88)
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ACD40_41_20
uncultured bacterium, Bacteria
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Not on your lists |
comp(15495..15776)
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seg (db=Seg db_id=seg from=25 to=42)
Uncharacterized protein {ECO:0000313|EMBL:EKD80780.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD40_41_21
uncultured bacterium, Bacteria
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Not on your lists |
comp(15876..16238)
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rplT; 50S ribosomal protein L20
RIBOSOMAL_L20 (db=PatternScan db_id=PS00937 from=54 to=70 evalue=0.0 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=1 to=116 evalue=3.4e-36 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal_L20 (db=HMMPfam db_id=PF00453 from=2 to=109 evalue=1.3e-34 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
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ACD40_41_22
GWC2_OP11_46_7_partial, Microgenomates, Bacteria
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Not on your lists |
comp(16243..16443)
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seg (db=Seg db_id=seg from=4 to=19)
L35p-like (db=superfamily db_id=SSF143034 from=4 to=66 evalue=2.6e-09)
Ribosomal_L35p (db=HMMPfam db_id=PF01632 from=5 to=64 evalue=3.9e-05 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Tax=GWC2_OP11_46_7_partial
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ACD40_41_23
uncultured bacterium, Bacteria
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Not on your lists |
comp(16447..16962)
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translation initiation factor IF-3
infC: translation initiation factor IF-3 (db=HMMTigr db_id=TIGR00168 from=6 to=169 evalue=9.2e-46 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
TRANSLATION INITIATION FACTOR IF-3 (db=HMMPanther db_id=PTHR10938 from=21 to=170 evalue=7.4e-33 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
IF3_N (db=HMMPfam db_id=PF05198 from=4 to=76 evalue=2.9e-26 interpro_id=IPR019814 interpro_description=Translation initiation factor 3, N-terminal GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
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ACD40_41_24
uncultured bacterium, Bacteria
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Not on your lists |
comp(16970..18820)
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Ser-tRNA(Thr) hydrolase/threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3)
Ser-tRNA(Thr) hydrolase/threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3)
Threonyl-tRNA synthetase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=SYT_RUBXD (db=UNIREF evalue=6.0e-151 bit_score=538.0 identity=47.27 coverage=89.1410048622366)
seg (db=Seg db_id=seg from=80 to=91)
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ACD40_41_25
GWA2_OP11_42_12, Amesbacteria, Microgenomates, Bacteria
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Not on your lists |
comp(19037..19711)
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19037..19711 - (rbs_motif=ATA rbs_spacer=10bp)
hypothetical protein Tax=GWA2_OP11_42_12
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ACD40_41_26
uncultured bacterium, Bacteria
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Not on your lists |
comp(19729..20469)
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hypothetical protein
Trigger factor n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P7T9_9LACO (db=UNIREF evalue=1.0e-13 bit_score=80.1 identity=36.61 coverage=44.1295546558704)
Trigger_N (db=HMMPfam db_id=PF05697 from=3 to=125 evalue=8.7e-27 interpro_id=IPR008881 interpro_description=Trigger factor, ribosome-binding, bacterial GO=Biological Process: protein folding (GO:0006457), Biological Process: protein transport (GO:0015031))
Trigger factor ribosome-binding domain (db=superfamily db_id=SSF102735 from=2 to=131 evalue=1.6e-26 interpro_id=IPR008881 interpro_description=Trigger factor, ribosome-binding, bacterial GO=Biological Process: protein folding (GO:0006457), Biological Process: protein transport (GO:0015031))
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ACD40_41_27
GWA2_OP11_42_12, Amesbacteria, Microgenomates, Bacteria
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Not on your lists |
comp(20585..21076)
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20585..21076 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:KKS31107.1}; TaxID=1618356 species="Bacteria; Microgenomates.;" source="Microgenomates (Amesbacteria) bacterium GW2011_GWA2_42_12.;"
hypothetical protein
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ACD40_41_28
GWA2_OP11_42_12, Amesbacteria, Microgenomates, Bacteria
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Not on your lists |
comp(21827..22132)
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hypothetical protein
all-alpha NTP pyrophosphatases (db=superfamily db_id=SSF101386 from=1 to=96 evalue=5.6e-13)
hypothetical protein alias=ACD40_C00041G00028,ACD40_103983.24544.14G0028,ACD40_103983.24544.14_28 id=51736 tax=ACD40 species=Kribbella flavida genus=Kribbella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=OP11 organism_desc=OP11
Uncharacterized protein {ECO:0000313|EMBL:KKS31109.1}; TaxID=1618356 species="Bacteria; Microgenomates.;" source="Microgenomates (Amesbacteria) bacterium GW2011_GWA2_42_12.;"
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ACD40_41_29
GWA2_OP11_42_12, Amesbacteria, Microgenomates, Bacteria
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Not on your lists |
22199..22726
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putative fusion protein (N:peptidase-C:desuccinylase)
Peptidase_C39 (db=HMMPfam db_id=PF03412 from=34 to=150 evalue=4.0e-13 interpro_id=IPR005074 interpro_description=Peptidase C39, bacteriocin processing GO=Molecular Function: ATP binding (GO:0005524), Biological Process: proteolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233), Cellular Component: integral to membrane (GO:0016021))
PEPTIDASE_C39 (db=ProfileScan db_id=PS50990 from=28 to=157 evalue=11.442 interpro_id=IPR005074 interpro_description=Peptidase C39, bacteriocin processing GO=Molecular Function: ATP binding (GO:0005524), Biological Process: proteolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233), Cellular Component: integral to membrane (GO:0016021))
Putative fusion protein (N:peptidase-C:desuccinylase) Tax=GWA2_OP11_42_12
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ACD40_41_30
GWA2_OP11_42_12, Amesbacteria, Microgenomates, Bacteria
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Not on your lists |
22723..23775
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D-alanine--D-alanine ligase (EC:6.3.2.4)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=126 to=335 evalue=3.2e-20)
D-ALANINE--D-ALANINE LIGASE (db=HMMPanther db_id=PTHR23132 from=72 to=320 evalue=2.0e-12)
no description (db=Gene3D db_id=G3DSA:3.30.470.20 from=183 to=336 evalue=1.4e-09 interpro_id=IPR013816 interpro_description=ATP-grasp fold, subdomain 2 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: ATP binding (GO:0005524))
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