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ACD40_42

Alias: ACD40_29612.8241.16

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD40_42_1

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comp(3..398)
DNA (396bp) protein (132aa)
Putative peptidase E n=1 Tax=Capnocytophaga sputigena RepID=D5HKL3_CAPSP (db=UNIREF evalue=1.0e-12 bit_score=75.5 identity=35.97 coverage=96.969696969697)
peptidase S51 dipeptidase E (EC:3.4.13.21)
Peptidase_S51 (db=HMMPfam db_id=PF03575 from=50 to=132 evalue=5.5e-17 interpro_id=IPR005320 interpro_description=Peptidase S51, dipeptidase E GO=Biological Process: proteolysis (GO:0006508), Molecular Function: serine-type peptidase activity (GO:0008236))
Class I glutamine amidotransferase-like (db=superfamily db_id=SSF52317 from=2 to=132 evalue=6.7e-13)
ACD40_42_2
Microgenomates bacterium GW2011_GWA1_46_7, Microgenomates, Bacteria

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comp(401..721)
DNA (321bp) protein (107aa)
Large-conductance mechanosensitive channel-like protein
seg (db=Seg db_id=seg from=92 to=106)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
ACD40_42_3
Microgenomates bacterium GW2011_GWF2_46_18, Microgenomates, Bacteria

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806..1096
DNA (291bp) protein (97aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Zinc finger CCCH domain-containing protein {ECO:0000313|EMBL:KKU28239.1}; TaxID=1618540 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWF2_46_18.;"
ACD40_42_4
GWC1_OP11_46_16, Microgenomates, Bacteria

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1039..1788
DNA (750bp) protein (250aa)
seg (db=Seg db_id=seg from=84 to=105)
seg (db=Seg db_id=seg from=23 to=44)
seg (db=Seg db_id=seg from=3 to=19)
coiled-coil (db=Coil db_id=coil from=82 to=103 evalue=NA)
ACD40_42_5
Microgenomates bacterium GW2011_GWF1_46_12, Microgenomates, Bacteria

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2006..2374
DNA (369bp) protein (123aa)
RNA-binding protein
seg (db=Seg db_id=seg from=87 to=116)
GLYCINE-RICH RNA-BINDING PROTEIN (db=HMMPanther db_id=PTHR10432:SF31 from=3 to=120 evalue=2.8e-39 interpro_id=IPR015465 interpro_description=RNA recognition motif, glycine rich protein)
RNA-BINDING PROTEIN (db=HMMPanther db_id=PTHR10432 from=3 to=120 evalue=2.8e-39)
ACD40_42_6

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2480..3139
DNA (660bp) protein (220aa)
two component transcriptional regulator, winged helix family protein
Two component transcriptional regulator, winged helix family n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSR3_9BACT (db=UNIREF evalue=8.0e-58 bit_score=226.0 identity=56.31 coverage=96.8181818181818)
seg (db=Seg db_id=seg from=108 to=123)
no description (db=HMMSmart db_id=SM00448 from=1 to=112 evalue=1.1e-41 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD40_42_7

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3102..4160
DNA (1059bp) protein (353aa)
integral membrane sensor signal transduction histidine kinase
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=112)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=90 to=109)
ACD40_42_8

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4165..5493
DNA (1329bp) protein (443aa)
RND family efflux transporter MFP subunit
Periplasmic component of efflux system n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y5I3_9BACT (db=UNIREF evalue=6.0e-21 bit_score=105.0 identity=26.84 coverage=80.8126410835214)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=36)
seg (db=Seg db_id=seg from=428 to=441)
ACD40_42_9

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5495..6202
DNA (708bp) protein (236aa)
PhnL2; lipoprotein release ABC transporter ATPase
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=149 to=163 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=9 to=224 evalue=2.6e-107)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=9 to=224 evalue=2.6e-107)
ACD40_42_10

Not on your lists

6195..7427
DNA (1233bp) protein (411aa)
multidrug ABC transporter substrate-binding protein
seg (db=Seg db_id=seg from=345 to=362)
seg (db=Seg db_id=seg from=72 to=84)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
ACD40_42_11

Not on your lists

7449..7892
DNA (444bp) protein (148aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
Uncharacterized protein {ECO:0000313|EMBL:EKD80424.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD40_42_12

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7918..8277
DNA (360bp) protein (120aa)
seg (db=Seg db_id=seg from=88 to=103)
seg (db=Seg db_id=seg from=68 to=76)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=12 to=120 evalue=1.4e-09)
Uncharacterized protein {ECO:0000313|EMBL:EKD80425.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 12 items

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