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ACD41_22

Alias: ACD41_41910.24875.19

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD41_22_1

Not on your lists

comp(1..495)
DNA (495bp) protein (165aa)
guaA; GMP synthase (EC:6.3.5.2)
GMP SYNTHASE (db=HMMPanther db_id=PTHR11922:SF2 from=7 to=164 evalue=2.6e-60)
GMP SYNTHASE-RELATED (db=HMMPanther db_id=PTHR11922 from=7 to=164 evalue=2.6e-60)
guaA_Nterm: GMP synthase (glutamine-hydrol (db=HMMTigr db_id=TIGR00888 from=8 to=165 evalue=3.8e-51 interpro_id=IPR004739 interpro_description=GMP synthase, N-terminal GO=Molecular Function: GMP synthase (glutamine-hydrolyzing) activity (GO:0003922), Molecular Function: ATP binding (GO:0005524), Biological Process: GMP biosynthetic process (GO:0006177))
ACD41_22_2

Not on your lists

comp(500..2002)
DNA (1503bp) protein (501aa)
IMP cyclohydrolase
IMP cyclohydrolase
Phosphoribosyl aminoimidazole carboxamide formyltransferase/IMPcyclohydrolase n=6 Tax=Geobacillus RepID=A4IJX7_GEOTN (db=UNIREF evalue=1.0e-153 bit_score=546.0 identity=55.49 coverage=99.4011976047904)
seg (db=Seg db_id=seg from=431 to=445)
ACD41_22_3

Not on your lists

comp(2032..4140)
DNA (2109bp) protein (703aa)
oxidoreductase
seg (db=Seg db_id=seg from=19 to=39)
seg (db=Seg db_id=seg from=104 to=114)
transmembrane_regions (db=TMHMM db_id=tmhmm from=529 to=546)
ACD41_22_4

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comp(4143..4826)
DNA (684bp) protein (228aa)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=68 to=171 evalue=4.8e-07 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Acetyltransf_1 (db=HMMPfam db_id=PF00583 from=85 to=162 evalue=0.00015 interpro_id=IPR022610 interpro_description=GCN5-related N-acetyltransferase, C-terminal)
Uncharacterized protein {ECO:0000313|EMBL:EKD78787.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_22_5

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comp(4831..5397)
DNA (567bp) protein (189aa)
purN; Phosphoribosylglycinamide formyltransferase
seg (db=Seg db_id=seg from=14 to=27)
GART (db=PatternScan db_id=PS00373 from=135 to=158 evalue=0.0 interpro_id=IPR001555 interpro_description=Phosphoribosylglycinamide formyltransferase, active site GO=Molecular Function: methyltransferase activity (GO:0008168))
Formyltransferase (db=superfamily db_id=SSF53328 from=2 to=188 evalue=3.0e-54 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
ACD41_22_6

Not on your lists

comp(5390..6706)
DNA (1317bp) protein (439aa)
purD; phosphoribosylamine--glycine ligase (EC:6.3.4.13)
purD; phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylaminoimidazolesuccinocarboxamide synthase, Phosphoribosylamine--glycine ligase n=2 Tax=Francisella philomiragia RepID=B0U007_FRAP2 (db=UNIREF evalue=6.0e-120 bit_score=434.0 identity=51.26 coverage=98.8610478359909)
seg (db=Seg db_id=seg from=385 to=407)
ACD41_22_7

Not on your lists

comp(6709..8178)
DNA (1470bp) protein (490aa)
Amidophosphoribosyltransferase n=3 Tax=Nitrosococcus RepID=Q3JAK3_NITOC (db=UNIREF evalue=3.0e-132 bit_score=475.0 identity=50.72 coverage=98.3673469387755)
amidophosphoribosyltransferase (EC:2.4.2.14)
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase (db=HMMPIR db_id=PIRSF000485 from=1 to=476 evalue=1.9e-178 interpro_id=IPR005854 interpro_description=Amidophosphoribosyl transferase GO=Molecular Function: amidophosphoribosyltransferase activity (GO:0004044), Biological Process: purine base biosynthetic process (GO:0009113))
ACD41_22_8

Not on your lists

comp(8181..9542)
DNA (1362bp) protein (454aa)
Adenylosuccinate lyase n=2 Tax=Photorhabdus RepID=C7BTH2_PHOAA (db=UNIREF evalue=1.0e-137 bit_score=493.0 identity=52.24 coverage=97.7973568281938)
adenylosuccinate lyase (EC:4.3.2.2)
adenylosuccinate lyase (EC:4.3.2.2)
FUMARATE_LYASES (db=PatternScan db_id=PS00163 from=293 to=302 evalue=0.0 interpro_id=IPR020557 interpro_description=Fumarate lyase, conserved site GO=Molecular Function: catalytic activity (GO:0003824))
ACD41_22_9

Not on your lists

comp(9562..9777)
DNA (216bp) protein (72aa)
coiled-coil (db=Coil db_id=coil from=10 to=71 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD78792.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_22_10

Not on your lists

comp(9764..10477)
DNA (714bp) protein (238aa)
9764..10477 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD78793.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_22_11

Not on your lists

comp(10533..11504)
DNA (972bp) protein (324aa)
purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylimidazole-succinocarboxamide synthase n=3 Tax=Legionella pneumophila RepID=Q5ZUW7_LEGPH (db=UNIREF evalue=4.0e-118 bit_score=427.0 identity=64.61 coverage=94.4444444444444)
SAICAR_SYNTHETASE_2 (db=PatternScan db_id=PS01058 from=210 to=218 evalue=0.0 interpro_id=IPR018236 interpro_description=SAICAR synthetase, conserved site GO=Molecular Function: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity (GO:0004639), Biological Process: purine nucleotide biosynthetic process (GO:0006164))
ACD41_22_12

Not on your lists

comp(11486..12766)
DNA (1281bp) protein (427aa)
purQ; Phosphoribosylformylglycinamidine synthase I (FGAM synthase I)
Class I glutamine amidotransferase-like (db=superfamily db_id=SSF52317 from=2 to=246 evalue=1.7e-53)
FGAM_synth_I: phosphoribosylformylglycin (db=HMMTigr db_id=TIGR01737 from=2 to=245 evalue=9.2e-43 interpro_id=IPR010075 interpro_description=Phosphoribosylformylglycinamidine synthase I GO=Molecular Function: phosphoribosylformylglycinamidine synthase activity (GO:0004642), Cellular Component: cytoplasm (GO:0005737), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE (db=HMMPanther db_id=PTHR10099 from=19 to=229 evalue=4.0e-25)
ACD41_22_13

Not on your lists

comp(12754..13791)
DNA (1038bp) protein (346aa)
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=19 Tax=Francisella RepID=A7NA92_FRATF (db=UNIREF evalue=5.0e-92 bit_score=341.0 identity=48.81 coverage=96.242774566474)
PHOSPHORIBOSYLAMINE-GLYCINE LIGASE-RELATED (db=HMMPanther db_id=PTHR10520 from=1 to=345 evalue=3.8e-132)
ACD41_22_14

Not on your lists

comp(13775..14971)
DNA (1197bp) protein (399aa)
NADP-dependent malate dehydrogenase n=6 Tax=Bacteroidales RepID=A6LCR6_PARD8 (db=UNIREF evalue=2.0e-132 bit_score=475.0 identity=59.9 coverage=98.4962406015038)
malic enzyme (EC:1.1.1.40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
Not to be confused with malate dehydrogenase of TCA Malic enzyme converts malate to pyruvate, releases CO2 and NADPH. Might be used to generate NADPH on substrates with low flux thru PP. Could also with MDH and pyruvate carboxylase would catalyze an ATP dependent metabolic cycle converting NADH to NADPH without a loss of carbon. (sauer, 2005) kelly wrighton (11/15/12)
ACD41_22_15

Not on your lists

comp(14968..15507)
DNA (540bp) protein (180aa)
fumarate hydratase
Fumarate hydratase class I, aerobic n=1 Tax=Geobacillus stearothermophilus RepID=FUMA_BACST (db=UNIREF evalue=4.0e-38 bit_score=160.0 identity=47.09 coverage=93.8888888888889)
no description (db=Gene3D db_id=G3DSA:3.20.130.10 from=2 to=166 evalue=1.3e-45 interpro_id=IPR004647 interpro_description=Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO=Molecular Function: hydro-lyase activity (GO:0016836))
Fumerase_C (db=HMMPfam db_id=PF05683 from=2 to=169 evalue=7.8e-46 interpro_id=IPR004647 interpro_description=Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO=Molecular Function: hydro-lyase activity (GO:0016836))
ACD41_22_16

Not on your lists

comp(15495..16373)
DNA (879bp) protein (293aa)
fumarate hydratase class I subunit alpha (EC:4.2.1.2)
ttdA_fumA_fumB: hydrolyase, tartrate a (db=HMMTigr db_id=TIGR00722 from=20 to=291 evalue=1.1e-68 interpro_id=IPR004646 interpro_description=Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO=Molecular Function: lyase activity (GO:0016829))
Fumerase (db=HMMPfam db_id=PF05681 from=21 to=289 evalue=1.8e-67 interpro_id=IPR004646 interpro_description=Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO=Molecular Function: lyase activity (GO:0016829))
Uncharacterized protein {ECO:0000313|EMBL:EKD78799.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_22_17

Not on your lists

comp(16387..18735)
DNA (2349bp) protein (783aa)
Phosphoribosylformylglycinamidine synthase n=5 Tax=Legionella pneumophila RepID=D5TDS3_LEGPN (db=UNIREF evalue=0.0 bit_score=788.0 identity=51.21 coverage=98.595146871009)
purL; phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
purL; phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
FGAM_synth_II: phosphoribosylformylglyc (db=HMMTigr db_id=TIGR01736 from=27 to=782 evalue=2.0e-186 interpro_id=IPR010074 interpro_description=Phosphoribosylformylglycinamidine synthase II GO=Molecular Function: phosphoribosylformylglycinamidine synthase activity (GO:0004642), Cellular Component: cytoplasm (GO:0005737), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
ACD41_22_18

Not on your lists

comp(18739..19596)
DNA (858bp) protein (286aa)
adenylosuccinate synthetase (EC:6.3.4.4)
ADENYLOSUCCINATE SYNTHETASE (db=HMMPanther db_id=PTHR11846 from=1 to=284 evalue=1.1e-107 interpro_id=IPR001114 interpro_description=Adenylosuccinate synthetase GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: adenylosuccinate synthase activity (GO:0004019), Molecular Function: GTP binding (GO:0005525), Cellular Component: cytoplasm (GO:0005737), Biological Process: purine nucleotide biosynthetic process (GO:0006164))
Adenylsucc_synt (db=HMMPfam db_id=PF00709 from=1 to=282 evalue=4.5e-95 interpro_id=IPR001114 interpro_description=Adenylosuccinate synthetase GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: adenylosuccinate synthase activity (GO:0004019), Molecular Function: GTP binding (GO:0005525), Cellular Component: cytoplasm (GO:0005737), Biological Process: purine nucleotide biosynthetic process (GO:0006164))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=284 evalue=1.9e-90)
ACD41_22_19

Not on your lists

comp(19619..20086)
DNA (468bp) protein (156aa)
purA; adenylosuccinate synthetase PurA (EC:6.3.4.4)
Adenylosuccinate synthetase n=2 Tax=Fusobacterium RepID=C6JJX3_FUSVA (db=UNIREF evalue=4.0e-35 bit_score=149.0 identity=61.34 coverage=75.0)
seg (db=Seg db_id=seg from=130 to=147)
ADENYLOSUCCIN_SYN_1 (db=PatternScan db_id=PS01266 from=17 to=24 evalue=0.0 interpro_id=IPR018220 interpro_description=Adenylosuccinate synthase, active site GO=Molecular Function: adenylosuccinate synthase activity (GO:0004019), Molecular Function: GTP binding (GO:0005525), Biological Process: purine nucleotide biosynthetic process (GO:0006164))
ACD41_22_20

Not on your lists

comp(20094..20465)
DNA (372bp) protein (124aa)
5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
THF_DHG_CYH_C (db=HMMPfam db_id=PF02882 from=2 to=118 evalue=4.8e-42 interpro_id=IPR020631 interpro_description=Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
METHYLENETETRAHYDROFOLATE DEHYDROGENASE FAMILY MEMBER (db=HMMPanther db_id=PTHR10025 from=3 to=119 evalue=4.5e-39)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=3 to=117 evalue=5.7e-28)
ACD41_22_21

Not on your lists

21075..21725
DNA (651bp) protein (217aa)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=16 evalue=5.0)
Uncharacterized protein {ECO:0000313|EMBL:EKD78782.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_22_22

Not on your lists

comp(21734..23296)
DNA (1563bp) protein (521aa)
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
transmembrane_regions (db=TMHMM db_id=tmhmm from=171 to=193)
transmembrane_regions (db=TMHMM db_id=tmhmm from=198 to=220)
transmembrane_regions (db=TMHMM db_id=tmhmm from=227 to=249)
Much larger than expected (NCBI BLAST) Jill Banfield (11/15/12)
ACD41_22_23

Not on your lists

comp(23374..23973)
DNA (600bp) protein (200aa)
N-acyl-L-homoserine lactone synthetase-like protein (db=KEGG evalue=4.0e-12 bit_score=74.3 identity=32.48 coverage=75.5)
N-acyl-L-homoserine lactone synthetase-like protein n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZZ0_GEOSF (db=UNIREF evalue=4.0e-12 bit_score=74.3 identity=32.48 coverage=75.5)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=197 evalue=4.6e-26 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Autoind_synth (db=HMMPfam db_id=PF00765 from=9 to=144 evalue=5.9e-10 interpro_id=IPR001690 interpro_description=Autoinducer synthesis protein GO=Biological Process: signal transduction (GO:0007165))
ACD41_22_24

Not on your lists

comp(24027..24299)
DNA (273bp) protein (91aa)
24027..24299 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD78785.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_22_25

Not on your lists

comp(24690..24914)
DNA (225bp) protein (75aa)
24690..24914 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD78781.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 25 items

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