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ACD41_40

Alias: ACD41_8479.20302.18

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD41_40_1

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240..1097
DNA (858bp) protein (286aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Aspartate/ornithine carbamoyltransferase (db=superfamily db_id=SSF53671 from=1 to=284 evalue=2.4e-76 interpro_id=IPR006130 interpro_description=Aspartate/ornithine carbamoyltransferase GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: amino acid binding (GO:0016597), Molecular Function: carboxyl- or carbamoyltransferase activity (GO:0016743))
CARBAMOYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11405 from=126 to=285 evalue=7.6e-45)
ORNITHINE CARBAMOYLTRANSFERASE (db=HMMPanther db_id=PTHR11405:SF1 from=126 to=285 evalue=7.6e-45)
ACD41_40_2

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1105..2394
DNA (1290bp) protein (430aa)
Argininosuccinate synthase n=2 Tax=Francisella philomiragia RepID=B0U0L9_FRAP2 (db=UNIREF evalue=1.0e-140 bit_score=503.0 identity=58.82 coverage=94.4186046511628)
argG; argininosuccinate synthase (EC:6.3.4.5)
argG; argininosuccinate synthase (EC:6.3.4.5)
seg (db=Seg db_id=seg from=413 to=422)
ACD41_40_3

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2436..3794
DNA (1359bp) protein (453aa)
decarboxylase
ODR_DC_2_1 (db=PatternScan db_id=PS00878 from=87 to=105 evalue=0.0 interpro_id=IPR022653 interpro_description=Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site)
PLP-binding barrel (db=superfamily db_id=SSF51419 from=48 to=311 evalue=3.8e-32)
no description (db=Gene3D db_id=G3DSA:3.20.20.10 from=60 to=309 evalue=3.0e-27)
ACD41_40_4

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3798..4646
DNA (849bp) protein (283aa)
peptidyl-arginine deiminase/hydrolase fusion protein
no description (db=Gene3D db_id=G3DSA:3.60.110.10 from=7 to=281 evalue=5.1e-82 interpro_id=IPR003010 interpro_description=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase GO=Biological Process: nitrogen compound metabolic process (GO:0006807), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
Carbon-nitrogen hydrolase (db=superfamily db_id=SSF56317 from=5 to=281 evalue=1.3e-79 interpro_id=IPR003010 interpro_description=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase GO=Biological Process: nitrogen compound metabolic process (GO:0006807), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
NITRILASE-RELATED (db=HMMPanther db_id=PTHR23088 from=90 to=281 evalue=3.9e-52)
arginine/proline Jill Banfield (11/15/12)
ACD41_40_5

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4652..5692
DNA (1041bp) protein (347aa)
agmatine deiminase (EC:3.5.3.12)
agmatine deiminase (EC:3.5.3.12)
Porphyromonas-type peptidyl-arginine deiminase n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I5W9_METB6 (db=UNIREF evalue=7.0e-108 bit_score=394.0 identity=53.37 coverage=97.9827089337176)
no description (db=Gene3D db_id=G3DSA:3.75.10.10 from=1 to=343 evalue=6.4e-113)
arginine/proline Jill Banfield (11/15/12)
ACD41_40_6

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6813..7337
DNA (525bp) protein (175aa)
hypothetical protein
NUDIX_BOX (db=PatternScan db_id=PS00893 from=73 to=94 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=2 to=169 evalue=1.9e-38 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=1 to=173 evalue=2.8e-36 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
ACD41_40_7

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comp(7299..9263)
DNA (1965bp) protein (655aa)
excinuclease ABC subunit B
excinuclease ABC subunit B
Excinuclease ABC, B subunit n=1 Tax=Thermincola sp. JR RepID=D5XCB5_9FIRM (db=UNIREF evalue=0.0 bit_score=801.0 identity=61.51 coverage=97.8625954198473)
seg (db=Seg db_id=seg from=481 to=492)
ACD41_40_8

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10368..10799
DNA (432bp) protein (144aa)
seg (db=Seg db_id=seg from=45 to=56)
Uncharacterized protein {ECO:0000313|EMBL:EKD78305.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_40_9

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10844..10975
DNA (132bp) protein (44aa)
10844..10975 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD78306.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_40_10

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11040..11600
DNA (561bp) protein (187aa)
ruvA; Holliday junction DNA helicase RuvA
seg (db=Seg db_id=seg from=88 to=98)
ruvA: Holliday junction DNA helicase RuvA (db=HMMTigr db_id=TIGR00084 from=1 to=184 evalue=1.1e-43 interpro_id=IPR000085 interpro_description=Bacterial DNA recombination protein RuvA GO=Molecular Function: DNA helicase activity (GO:0003678), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
no description (db=Gene3D db_id=G3DSA:1.10.150.20 from=68 to=130 evalue=2.2e-17)
ACD41_40_11

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11593..12390
DNA (798bp) protein (266aa)
methicillin resistance protein
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=85 to=260 evalue=3.0e-30 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=77 to=234 evalue=1.3e-28 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
FemAB (db=HMMPfam db_id=PF02388 from=163 to=262 evalue=8.5e-23 interpro_id=IPR003447 interpro_description=Methicillin resistance protein GO=Biological Process: peptidoglycan biosynthetic process (GO:0009252))
ACD41_40_12

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12348..13082
DNA (735bp) protein (245aa)
Glucose-1-phosphate thymidylyltransferase
seg (db=Seg db_id=seg from=56 to=68)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=11 to=243 evalue=2.2e-53)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=15 to=241 evalue=1.4e-47)
ACD41_40_13
GWD2_OD1_36_12, Moranbacteria, Parcubacteria, Bacteria

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13079..13399
DNA (321bp) protein (107aa)
hypothetical protein
CofD-like (db=superfamily db_id=SSF142338 from=1 to=79 evalue=2.7e-28)
UPF0052 (db=HMMPfam db_id=PF01933 from=5 to=80 evalue=4.3e-24 interpro_id=IPR002882 interpro_description=LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052)
protein of unknown function UPF0052 and CofD alias=ACD41_C00040G00013,ACD41_8479.20302.18G0013,ACD41_8479.20302.18_13 id=53018 tax=ACD41 species=Sebaldella termitidis genus=Sebaldella taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria organism_group=OD1, not OD1-i organism_desc=OD1
ACD41_40_14

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13350..14117
DNA (768bp) protein (256aa)
hypothetical protein
CofD-like (db=superfamily db_id=SSF142338 from=1 to=249 evalue=2.7e-59)
UPF0052 (db=HMMPfam db_id=PF01933 from=2 to=206 evalue=3.7e-54 interpro_id=IPR002882 interpro_description=LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052)
CofD_related: conserved hypothetical pro (db=HMMTigr db_id=TIGR01826 from=2 to=252 evalue=5.5e-51 interpro_id=IPR010119 interpro_description=Uncharacterised protein family UPF0052)
ACD41_40_15

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14099..14671
DNA (573bp) protein (191aa)
seg (db=Seg db_id=seg from=3 to=16)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=189 evalue=4.8e-11)
NIF (db=HMMPfam db_id=PF03031 from=3 to=115 evalue=3.3e-06 interpro_id=IPR004274 interpro_description=NLI interacting factor)
Uncharacterized protein {ECO:0000313|EMBL:EKD78294.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_40_16

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14687..14986
DNA (300bp) protein (100aa)
14687..14986 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD78295.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_40_17

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14989..16077
DNA (1089bp) protein (363aa)
putative Exodeoxyribonuclease 7 large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NUZ3_9BACE (db=UNIREF evalue=1.0e-61 bit_score=240.0 identity=37.66 coverage=98.6225895316804)
Exonuc_VII_L (db=HMMPfam db_id=PF02601 from=115 to=283 evalue=5.6e-62 interpro_id=IPR020579 interpro_description=Exonuclease VII, large subunit, C-terminal)
xseA: exodeoxyribonuclease VII, large subuni (db=HMMTigr db_id=TIGR00237 from=5 to=361 evalue=1.7e-53 interpro_id=IPR003753 interpro_description=Exonuclease VII, large subunit GO=Biological Process: DNA catabolic process (GO:0006308), Molecular Function: exodeoxyribonuclease VII activity (GO:0008855), Cellular Component: exodeoxyribonuclease VII complex (GO:0009318))
ACD41_40_18

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16087..16317
DNA (231bp) protein (77aa)
coiled-coil (db=Coil db_id=coil from=51 to=72 evalue=NA)
XseB-like (db=superfamily db_id=SSF116842 from=1 to=75 evalue=4.4e-10)
Exonuc_VII_S (db=HMMPfam db_id=PF02609 from=9 to=60 evalue=9.7e-10 interpro_id=IPR003761 interpro_description=Exonuclease VII, small subunit GO=Biological Process: DNA catabolic process (GO:0006308), Molecular Function: exodeoxyribonuclease VII activity (GO:0008855), Cellular Component: exodeoxyribonuclease VII complex (GO:0009318))
EX7S_DESPS_Q6AJQ3; (db=BlastProDom db_id=PD028235 from=1 to=45 evalue=0.0005 interpro_id=IPR003761 interpro_description=Exonuclease VII, small subunit GO=Biological Process: DNA catabolic process (GO:0006308), Molecular Function: exodeoxyribonuclease VII activity (GO:0008855), Cellular Component: exodeoxyribonuclease VII complex (GO:0009318))
ACD41_40_19

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16283..17191
DNA (909bp) protein (303aa)
lytR2; transcriptional regulator LytR
Putative cell envelope-related function transcriptional attenuator n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLF4_9FIRM (db=UNIREF evalue=1.0e-20 bit_score=103.0 identity=27.86 coverage=77.8877887788779)
seg (db=Seg db_id=seg from=41 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
ACD41_40_20

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17191..17961
DNA (771bp) protein (257aa)
RecB family exonuclease
Cas_Cas4 (db=HMMPfam db_id=PF01930 from=123 to=237 evalue=1.1e-11)
Uncharacterized protein {ECO:0000313|EMBL:EKD78299.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD41_C00040G00020,ACD41_8479.20302.18G0020,ACD41_8479.20302.18_20 id=53007 tax=ACD41 species=Actinosynnema mirum genus=Actinosynnema taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=OD1, not OD1-i organism_desc=OD1
ACD41_40_21

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17942..18742
DNA (801bp) protein (267aa)
hypothetical protein
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=67 to=161 evalue=1.4e-13 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=67 to=156 evalue=4.0e-07)
Uncharacterized protein {ECO:0000313|EMBL:EKD78300.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_40_22

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comp(18660..18944)
DNA (285bp) protein (95aa)
DNA/RNA polymerases (db=superfamily db_id=SSF56672 from=7 to=68 evalue=9.1e-10)
Uncharacterized protein {ECO:0000313|EMBL:EKD78301.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_40_23

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comp(18949..19557)
DNA (609bp) protein (203aa)
lexA; LexA repressor
lexA: repressor LexA (db=HMMTigr db_id=TIGR00498 from=1 to=202 evalue=4.5e-46 interpro_id=IPR006200 interpro_description=Peptidase S24, LexA repressor GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=79 to=201 evalue=9.3e-34 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=86 to=200 evalue=1.7e-32 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
ACD41_40_24

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comp(19641..20018)
DNA (378bp) protein (126aa)
PilT protein domain protein
PilT domain-containing protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GLF9_THISH (db=UNIREF evalue=2.0e-25 bit_score=118.0 identity=52.46 coverage=96.031746031746)
seg (db=Seg db_id=seg from=71 to=82)
PIN domain-like (db=superfamily db_id=SSF88723 from=1 to=122 evalue=3.0e-19)
ACD41_40_25

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comp(20015..20224)
DNA (210bp) protein (70aa)
AbrB family transcriptional regulator
lp_hng_hel_AbrB: transcriptional regu (db=HMMTigr db_id=TIGR01439 from=3 to=45 evalue=8.2e-08 interpro_id=IPR006339 interpro_description=Transcription regulator AbrB)
AbrB/MazE/MraZ-like (db=superfamily db_id=SSF89447 from=1 to=47 evalue=1.8e-07)
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:EKD78304.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 25 items

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