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ACD41_46

Alias: ACD41_10934.19310.17

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD41_46_1

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3..335
DNA (333bp) protein (111aa)
topA; putative DNA topoisomerase I
DNA topoisomerase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W269_9ACTO (db=UNIREF evalue=2.0e-18 bit_score=94.7 identity=38.98 coverage=98.1981981981982)
DNA topoisomerase {ECO:0000313|EMBL:EKD79617.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_46_2

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373..1800
DNA (1428bp) protein (476aa)
RelA/SpoT family protein n=2 Tax=Thermoanaerobacteraceae RepID=B7R9F3_9THEO (db=UNIREF evalue=3.0e-139 bit_score=499.0 identity=53.07 coverage=94.9579831932773)
SpoT; guanosine polyphosphate pyrophosphohydrolase/synthetase
SpoT; guanosine polyphosphate pyrophosphohydrolase/synthetase
coiled-coil (db=Coil db_id=coil from=359 to=380 evalue=NA)
ACD41_46_3

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comp(1854..2684)
DNA (831bp) protein (277aa)
parB; chromosome partitioning protein ParB
parB_part: ParB-like partition proteins (db=HMMTigr db_id=TIGR00180 from=22 to=203 evalue=2.4e-49 interpro_id=IPR004437 interpro_description=ParB-like partition protein GO=Molecular Function: DNA binding (GO:0003677))
ParB/Sulfiredoxin (db=superfamily db_id=SSF110849 from=24 to=163 evalue=7.0e-33 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00470 from=27 to=117 evalue=3.7e-29 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
ACD41_46_4

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comp(2688..3449)
DNA (762bp) protein (254aa)
chromosome segregation ATPase
seg (db=Seg db_id=seg from=82 to=95)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=250 evalue=3.5e-67)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=249 evalue=3.7e-62)
ACD41_46_5

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comp(3606..4064)
DNA (459bp) protein (153aa)
seg (db=Seg db_id=seg from=84 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=9 to=29 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
Pili subunits (db=superfamily db_id=SSF54523 from=11 to=150 evalue=1.2e-12)
ACD41_46_6

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comp(4079..5092)
DNA (1014bp) protein (338aa)
Type IV pilus assembly protein PilM n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ14_9FIRM (db=UNIREF evalue=1.0e-20 bit_score=104.0 identity=28.57 coverage=87.8698224852071)
ftsA; cell division protein FtsA
coiled-coil (db=Coil db_id=coil from=136 to=157 evalue=NA)
seg (db=Seg db_id=seg from=149 to=168)
ACD41_46_7

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comp(5108..5491)
DNA (384bp) protein (128aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:EKD79623.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_46_8

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comp(5488..5961)
DNA (474bp) protein (158aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Pili subunits (db=superfamily db_id=SSF54523 from=7 to=114 evalue=1.0e-06)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=4 to=27 evalue=0.0031 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
Uncharacterized protein {ECO:0000313|EMBL:EKD79624.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_46_9

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comp(5951..9532)
DNA (3582bp) protein (1194aa)
Putative uncharacterized protein n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4C6J9_CROWT (db=UNIREF evalue=2.0e-41 bit_score=175.0 identity=24.8 coverage=67.7554438860972)
hypothetical protein
seg (db=Seg db_id=seg from=1127 to=1131)
seg (db=Seg db_id=seg from=904 to=915)
ACD41_46_10

Not on your lists

comp(9510..9935)
DNA (426bp) protein (142aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
seg (db=Seg db_id=seg from=14 to=25)
seg (db=Seg db_id=seg from=116 to=133)
TONB_DEPENDENT_REC_1 (db=PatternScan db_id=PS00430 from=1 to=98 evalue=0.0 interpro_id=IPR010916 interpro_description=TonB box, conserved site)
ACD41_46_11

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comp(9938..11002)
DNA (1065bp) protein (355aa)
type II secretion system F domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=118 to=140)
transmembrane_regions (db=TMHMM db_id=tmhmm from=170 to=189)
ACD41_46_12

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comp(11006..11878)
DNA (873bp) protein (291aa)
type II secretion system protein E
T2SP_E (db=PatternScan db_id=PS00662 from=101 to=115 evalue=0.0 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=7 to=287 evalue=1.3e-89)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=2 to=288 evalue=1.6e-70)
ACD41_46_13

Not on your lists

comp(11817..12695)
DNA (879bp) protein (293aa)
secretion system protein E
Type II secretion system protein E n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT43_9BACT (db=UNIREF evalue=7.0e-29 bit_score=131.0 identity=32.62 coverage=72.0136518771331)
seg (db=Seg db_id=seg from=245 to=260)
no description (db=Gene3D db_id=G3DSA:3.30.450.90 from=128 to=244 evalue=6.2e-22)
ACD41_46_14

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comp(12700..13086)
DNA (387bp) protein (129aa)
response regulator receiver protein
Response regulator receiver protein n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z7K2_9NEIS (db=UNIREF evalue=7.0e-21 bit_score=102.0 identity=40.98 coverage=92.2480620155039)
CheY-like (db=superfamily db_id=SSF52172 from=5 to=128 evalue=1.0e-31 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=8 to=123 evalue=1.1e-29 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD41_46_15

Not on your lists

comp(13076..14137)
DNA (1062bp) protein (354aa)
hypothetical protein
TWO COMPONENT SENSOR HISTIDINE KINASE (PHOR) (db=HMMPanther db_id=PTHR23283:SF34 from=11 to=350 evalue=2.5e-72)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=11 to=350 evalue=2.5e-72)
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (db=superfamily db_id=SSF55874 from=182 to=350 evalue=1.1e-47 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
ACD41_46_16

Not on your lists

comp(14162..14749)
DNA (588bp) protein (196aa)
sodA; hypothetical protein
SUPEROXIDE DISMUTASE 2 (db=HMMPanther db_id=PTHR11404 from=16 to=192 evalue=2.9e-25 interpro_id=IPR001189 interpro_description=Manganese/iron superoxide dismutase GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
gb def: Superoxide dismutase [Fe] (EC 1.15.1.1) (db=HMMPanther db_id=PTHR11404:SF4 from=16 to=192 evalue=2.9e-25)
Fe,Mn superoxide dismutase (SOD), C-terminal domain (db=superfamily db_id=SSF54719 from=86 to=195 evalue=5.9e-25 interpro_id=IPR019832 interpro_description=Manganese/iron superoxide dismutase, C-terminal GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
ACD41_46_17

Not on your lists

comp(14776..16296)
DNA (1521bp) protein (507aa)
prenyltransferase/squalene oxidase
seg (db=Seg db_id=seg from=405 to=416)
seg (db=Seg db_id=seg from=213 to=224)
seg (db=Seg db_id=seg from=17 to=30)
ACD41_46_18

Not on your lists

comp(16280..16885)
DNA (606bp) protein (202aa)
seg (db=Seg db_id=seg from=78 to=89)
seg (db=Seg db_id=seg from=55 to=66)
seg (db=Seg db_id=seg from=12 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
ACD41_46_19

Not on your lists

17069..18484
DNA (1416bp) protein (472aa)
seg (db=Seg db_id=seg from=106 to=115)
Uncharacterized protein {ECO:0000313|EMBL:EKD79615.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_46_20

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comp(18743..19348)
DNA (606bp) protein (202aa)
seg (db=Seg db_id=seg from=128 to=150)
seg (db=Seg db_id=seg from=73 to=86)
Peptidase_M23 (db=HMMPfam db_id=PF01551 from=69 to=168 evalue=5.1e-11 interpro_id=IPR016047 interpro_description=Peptidase M23)
Duplicated hybrid motif (db=superfamily db_id=SSF51261 from=30 to=195 evalue=1.5e-07 interpro_id=IPR011055 interpro_description=Duplicated hybrid motif)
Displaying 20 items

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