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ACD41_60

Alias: ACD41_2797.10628.21

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD41_60_1

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comp(3..2171)
DNA (2169bp) protein (723aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J980_9ARCH (db=UNIREF evalue=3.0e-112 bit_score=409.0 identity=46.45 coverage=55.7399723374827)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=260 to=657 evalue=2.8e-35)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=300 to=624 evalue=3.6e-15)
ACD41_60_2

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comp(2187..2963)
DNA (777bp) protein (259aa)
protein-(glutamine-N5) methyltransferase, release factor-specific
RF_mod_PrmC: protein-(glutamine-N5) methy (db=HMMTigr db_id=TIGR03534 from=7 to=256 evalue=4.7e-97 interpro_id=IPR019874 interpro_description=Protein-(glutamine-N5) methyltransferase, release factor-specific)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=2 to=235 evalue=9.9e-52)
HEMK METHYLTRANSFERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR18895:SF7 from=77 to=257 evalue=5.3e-50)
ACD41_60_3

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comp(2960..4036)
DNA (1077bp) protein (359aa)
peptide chain release factor 1
peptide chain release factor 1
Peptide chain release factor 1 n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCP5_THET1 (db=UNIREF evalue=2.0e-94 bit_score=349.0 identity=52.12 coverage=97.7715877437326)
seg (db=Seg db_id=seg from=90 to=109)
ACD41_60_4

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comp(4037..4321)
DNA (285bp) protein (95aa)
50S ribosomal protein L31
seg (db=Seg db_id=seg from=70 to=94)
L31: ribosomal protein L31 (db=HMMTigr db_id=TIGR00105 from=1 to=67 evalue=6.1e-30 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L31 (db=HMMPfam db_id=PF01197 from=1 to=65 evalue=1.7e-26 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD41_60_5

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comp(4363..5151)
DNA (789bp) protein (263aa)
DUF218 (db=HMMPfam db_id=PF02698 from=46 to=146 evalue=2.0e-05 interpro_id=IPR003848 interpro_description=Protein of unknown function DUF218)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=18 evalue=5.0)
Uncharacterized protein {ECO:0000313|EMBL:EKD79029.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_60_6

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comp(5169..5777)
DNA (609bp) protein (203aa)
seg (db=Seg db_id=seg from=176 to=189)
seg (db=Seg db_id=seg from=139 to=152)
seg (db=Seg db_id=seg from=31 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=178 to=200)
ACD41_60_7

Not on your lists

comp(5789..6829)
DNA (1041bp) protein (347aa)
seg (db=Seg db_id=seg from=269 to=285)
seg (db=Seg db_id=seg from=99 to=106)
transmembrane_regions (db=TMHMM db_id=tmhmm from=296 to=318)
transmembrane_regions (db=TMHMM db_id=tmhmm from=267 to=289)
ACD41_60_8

Not on your lists

comp(6826..7926)
DNA (1101bp) protein (367aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=257 to=276)
transmembrane_regions (db=TMHMM db_id=tmhmm from=222 to=244)
transmembrane_regions (db=TMHMM db_id=tmhmm from=172 to=191)
transmembrane_regions (db=TMHMM db_id=tmhmm from=143 to=165)
ACD41_60_9

Not on your lists

comp(7931..8254)
DNA (324bp) protein (108aa)
PadR family transcriptional regulator
padR_acidobact: transcriptional regula (db=HMMTigr db_id=TIGR03433 from=9 to=107 evalue=9.3e-34 interpro_id=IPR017799 interpro_description=Transcription regulator PadR, acidobacterial-type)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=6 to=107 evalue=2.5e-27)
PadR (db=HMMPfam db_id=PF03551 from=8 to=89 evalue=1.0e-26 interpro_id=IPR005149 interpro_description=Transcription regulator PadR N-terminal-like)
ACD41_60_10

Not on your lists


8440..9165
DNA (726bp) protein (242aa)
rpsB; 30S ribosomal protein S2
RIBOSOMAL_S2_2 (db=PatternScan db_id=PS00963 from=163 to=187 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL_S2_1 (db=PatternScan db_id=PS00962 from=10 to=21 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsB_bact: ribosomal protein S2 (db=HMMTigr db_id=TIGR01011 from=7 to=232 evalue=1.1e-87 interpro_id=IPR005706 interpro_description=Ribosomal protein S2, bacteria/mitochondria/plastid GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD41_60_11
GWA2_OD1_53_7_partial, Giovannonibacteria, Parcubacteria, Bacteria

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9170..9757
DNA (588bp) protein (196aa)
tsf; elongation factor Ts
coiled-coil (db=Coil db_id=coil from=23 to=44 evalue=NA)
EF_TS_1 (db=PatternScan db_id=PS01126 from=11 to=26 evalue=0.0 interpro_id=IPR018101 interpro_description=Translation elongation factor Ts, conserved site GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
Elongation factor Ts (EF-Ts), dimerisation domain (db=superfamily db_id=SSF54713 from=56 to=195 evalue=7.4e-52 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ACD41_60_12
GWA2_OD1_53_7_partial, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

9757..10548
DNA (792bp) protein (264aa)
hypothetical protein
seg (db=Seg db_id=seg from=55 to=66)
seg (db=Seg db_id=seg from=11 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=3 to=25)
Displaying 12 items

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