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ACD41_65

Alias: ACD41_729.16541.19

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD41_65_1

Not on your lists

comp(3..98)
DNA (96bp) protein (32aa)
coiled-coil (db=Coil db_id=coil from=1 to=24 evalue=NA)
seg (db=Seg db_id=seg from=9 to=31)
Uncharacterized protein {ECO:0000313|EMBL:EKD78418.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_65_2

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comp(114..275)
DNA (162bp) protein (54aa)
114..275 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD78419.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_65_3

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comp(419..1705)
DNA (1287bp) protein (429aa)
nucleotidyltransferase/DNA polymerase protein
nucleotidyltransferase/DNA polymerase protein
Nucleotidyltransferase/DNA polymerase protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSC9_SYNAS (db=UNIREF evalue=2.0e-101 bit_score=373.0 identity=49.87 coverage=88.5780885780886)
seg (db=Seg db_id=seg from=133 to=150)
ACD41_65_4

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comp(1705..2268)
DNA (564bp) protein (188aa)
DNA polymerase V subunit
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=62 to=185 evalue=6.5e-34 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=69 to=184 evalue=2.2e-31 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
lexA: repressor LexA (db=HMMTigr db_id=TIGR00498 from=1 to=187 evalue=1.0e-21 interpro_id=IPR006200 interpro_description=Peptidase S24, LexA repressor GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
ACD41_65_5

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2399..2776
DNA (378bp) protein (126aa)
coiled-coil (db=Coil db_id=coil from=36 to=57 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD78422.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_65_6

Not on your lists

comp(2738..3028)
DNA (291bp) protein (97aa)
seg (db=Seg db_id=seg from=70 to=81)
seg (db=Seg db_id=seg from=39 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
ACD41_65_7

Not on your lists

comp(3010..3612)
DNA (603bp) protein (201aa)
tRNA (guanine-N7)-methyltransferase
TRNA (Guanine-N(7))-methyltransferase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HTE8_9BACT (db=UNIREF evalue=5.0e-42 bit_score=173.0 identity=40.91 coverage=99.0049751243781)
Methyltransf_4 (db=HMMPfam db_id=PF02390 from=30 to=196 evalue=1.9e-32 interpro_id=IPR003358 interpro_description=tRNA (guanine-N-7) methyltransferase GO=Biological Process: tRNA modification (GO:0006400), Molecular Function: tRNA (guanine-N7-)-methyltransferase activity (GO:0008176))
3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE (db=HMMPanther db_id=PTHR23417 from=31 to=191 evalue=1.2e-30)
ACD41_65_8

Not on your lists

3627..4652
DNA (1026bp) protein (342aa)
ribosomal RNA large subunit methyltransferase N
Predicted radical SAM enzyme, Cfr type (db=HMMPIR db_id=PIRSF006004 from=1 to=340 evalue=5.3e-97 interpro_id=IPR004383 interpro_description=Ribosomal RNA large subunit methyltransferase RlmN; GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
TIGR00048: radical SAM enzyme, Cfr family (db=HMMTigr db_id=TIGR00048 from=1 to=341 evalue=4.0e-89 interpro_id=IPR004383 interpro_description=Ribosomal RNA large subunit methyltransferase RlmN; GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=88 to=282 evalue=1.3e-14)
ACD41_65_9

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4657..5859
DNA (1203bp) protein (401aa)
PP2C-like (db=superfamily db_id=SSF81606 from=154 to=367 evalue=5.5e-06 interpro_id=IPR001932 interpro_description=Protein phosphatase 2C-related GO=Molecular Function: catalytic activity (GO:0003824))
Uncharacterized protein {ECO:0000313|EMBL:EKD78426.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_65_10

Not on your lists

5864..6952
DNA (1089bp) protein (363aa)
AAA ATPase central domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM49_DESAA (db=UNIREF evalue=3.0e-104 bit_score=382.0 identity=51.88 coverage=98.0716253443526)
ATPase AAA
ATPase AAA
coiled-coil (db=Coil db_id=coil from=219 to=240 evalue=NA)
ACD41_65_11

Not on your lists

comp(6942..8615)
DNA (1674bp) protein (558aa)
6942..8615 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD78428.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_65_12

Not on your lists

comp(8612..9112)
DNA (501bp) protein (167aa)
16S rRNA methyltransferase
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VQK0_9FLAO (db=UNIREF evalue=4.0e-24 bit_score=113.0 identity=43.7 coverage=70.6586826347305)
seg (db=Seg db_id=seg from=124 to=137)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=3 to=148 evalue=4.2e-43)
ACD41_65_13

Not on your lists

comp(9066..9971)
DNA (906bp) protein (302aa)
hypothetical protein
seg (db=Seg db_id=seg from=271 to=282)
seg (db=Seg db_id=seg from=133 to=144)
transmembrane_regions (db=TMHMM db_id=tmhmm from=265 to=287)
ACD41_65_14

Not on your lists


comp(10031..10372)
DNA (342bp) protein (114aa)
50S ribosomal protein L20
Ribosomal_L20 (db=HMMPfam db_id=PF00453 from=3 to=109 evalue=6.5e-29 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L20 (db=HMMPanther db_id=PTHR10986 from=1 to=111 evalue=2.0e-23 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
RIBOSOMALL20 (db=FPrintScan db_id=PR00062 from=12 to=41 evalue=5.4e-20 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD41_65_15

Not on your lists

comp(10378..10587)
DNA (210bp) protein (70aa)
seg (db=Seg db_id=seg from=7 to=25)
L35p-like (db=superfamily db_id=SSF143034 from=4 to=66 evalue=3.0e-06)
Uncharacterized protein {ECO:0000313|EMBL:EKD78432.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_65_16

Not on your lists

comp(10592..11083)
DNA (492bp) protein (164aa)
translation initiation factor IF-3
seg (db=Seg db_id=seg from=65 to=76)
seg (db=Seg db_id=seg from=24 to=35)
infC: translation initiation factor IF-3 (db=HMMTigr db_id=TIGR00168 from=1 to=163 evalue=6.3e-49 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
ACD41_65_17

Not on your lists

comp(11584..12030)
DNA (447bp) protein (149aa)
smpB; ssrA RNA (tmRNA)-binding protein
seg (db=Seg db_id=seg from=109 to=135)
smpB: SsrA-binding protein (db=HMMTigr db_id=TIGR00086 from=3 to=145 evalue=4.5e-38 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
Small protein B (SmpB) (db=superfamily db_id=SSF74982 from=1 to=127 evalue=2.5e-35 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
ACD41_65_18

Not on your lists


12071..13672
DNA (1602bp) protein (534aa)
argS; Arginine-tRNA ligase (EC:6.1.1.19)
argS; Arginine-tRNA ligase (EC:6.1.1.19)
Arginyl-tRNA synthetase n=4 Tax=Bacillus subtilis group RepID=SYR_BACA2 (db=UNIREF evalue=4.0e-105 bit_score=385.0 identity=42.42 coverage=99.625468164794)
seg (db=Seg db_id=seg from=375 to=389)
ACD41_65_19

Not on your lists

13675..14832
DNA (1158bp) protein (386aa)
group 1 glycosyl transferase
Similar to mannosyltransferase B n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1X2_9BACT (db=UNIREF evalue=6.0e-56 bit_score=221.0 identity=35.49 coverage=95.8549222797927)
seg (db=Seg db_id=seg from=191 to=202)
MANNOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF29 from=2 to=376 evalue=3.8e-71)
ACD41_65_20

Not on your lists

14792..15343
DNA (552bp) protein (184aa)
hypothetical protein
CNF1/YfiH-like putative cysteine hydrolases (db=superfamily db_id=SSF64438 from=1 to=182 evalue=1.3e-34 interpro_id=IPR011324 interpro_description=Cytotoxic necrotizing factor-like, catalytic)
no description (db=Gene3D db_id=G3DSA:3.60.140.10 from=1 to=181 evalue=3.6e-30 interpro_id=IPR003730 interpro_description=Multi-copper polyphenol oxidoreductase, laccase)
Cu-oxidase_4 (db=HMMPfam db_id=PF02578 from=30 to=126 evalue=7.2e-26 interpro_id=IPR003730 interpro_description=Multi-copper polyphenol oxidoreductase, laccase)
CxxCH Jill Banfield (11/15/12)
ACD41_65_21

Not on your lists

15403..15711
DNA (309bp) protein (103aa)
15403..15711 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD78438.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_65_22

Not on your lists

15699..16580
DNA (882bp) protein (294aa)
seg (db=Seg db_id=seg from=137 to=151)
Uncharacterized protein {ECO:0000313|EMBL:EKD78439.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 22 items

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