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ACD41_115

Alias: ACD41_35646.16951.21

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD41_115_1
ACD41, ACD41, ACD41, ACD41, Parcubacteria, Bacteria

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comp(3..161)
DNA (159bp) protein (53aa)
3..161 - (rbs_motif=None rbs_spacer=None)
ACD41_115_2
ACD41, ACD41, ACD41, ACD41, Parcubacteria, Bacteria

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comp(145..438)
DNA (294bp) protein (98aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD41_115_3

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comp(438..1355)
DNA (918bp) protein (306aa)
putative prephenate dehydrogenase
PDH (db=HMMPfam db_id=PF02153 from=31 to=217 evalue=2.6e-31 interpro_id=IPR003099 interpro_description=Prephenate dehydrogenase GO=Molecular Function: prephenate dehydrogenase (NADP+) activity (GO:0004665), Biological Process: tyrosine biosynthetic process (GO:0006571))
Chorismate mutase II (db=superfamily db_id=SSF48600 from=219 to=303 evalue=1.4e-19 interpro_id=IPR020822 interpro_description=Chorismate mutase, type II GO=Biological Process: chorismate metabolic process (GO:0046417))
no description (db=HMMSmart db_id=SM00830 from=227 to=305 evalue=5.9e-18 interpro_id=IPR002701 interpro_description=Chorismate mutase GO=Biological Process: chorismate metabolic process (GO:0046417))
ACD41_115_4

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comp(1337..1900)
DNA (564bp) protein (188aa)
chorismate mutase (EC:4.2.1.51)
PDT (db=HMMPfam db_id=PF00800 from=3 to=185 evalue=5.3e-45 interpro_id=IPR001086 interpro_description=Prephenate dehydratase GO=Molecular Function: prephenate dehydratase activity (GO:0004664), Biological Process: L-phenylalanine biosynthetic process (GO:0009094))
PREPHENATE DEHYDRATASE (P PROTEIN) (db=HMMPanther db_id=PTHR21022 from=1 to=182 evalue=3.9e-37)
PREPHENATE_DEHYDR_3 (db=ProfileScan db_id=PS51171 from=2 to=185 evalue=36.354 interpro_id=IPR001086 interpro_description=Prephenate dehydratase GO=Molecular Function: prephenate dehydratase activity (GO:0004664), Biological Process: L-phenylalanine biosynthetic process (GO:0009094))
ACD41_115_5

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comp(1897..2472)
DNA (576bp) protein (192aa)
1897..2472 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD78909.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_115_6

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comp(2469..3443)
DNA (975bp) protein (325aa)
chorismate synthase (EC:4.2.3.5)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=2 Tax=Roseiflexus RepID=AROC_ROSCS (db=UNIREF evalue=2.0e-94 bit_score=349.0 identity=52.25 coverage=99.3846153846154)
seg (db=Seg db_id=seg from=128 to=144)
ACD41_115_7

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comp(3433..4539)
DNA (1107bp) protein (369aa)
aroE; shikimate dehydrogenase (EC:1.1.1.25)
seg (db=Seg db_id=seg from=273 to=291)
no description (db=Gene3D db_id=G3DSA:3.40.192.10 from=154 to=277 evalue=1.3e-27)
Aminoacid dehydrogenase-like, N-terminal domain (db=superfamily db_id=SSF53223 from=150 to=251 evalue=3.8e-27)
ACD41_115_8

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comp(4526..6037)
DNA (1512bp) protein (504aa)
3-phosphoshikimate 1-carboxyvinyltransferase
SHIKIMATE_KINASE (db=PatternScan db_id=PS01128 from=409 to=434 evalue=0.0 interpro_id=IPR000623 interpro_description=Shikimate kinase GO=Molecular Function: shikimate kinase activity (GO:0004765), Molecular Function: ATP binding (GO:0005524))
EPSP_SYNTHASE_1 (db=PatternScan db_id=PS00104 from=78 to=92 evalue=0.0 interpro_id=IPR001986 interpro_description=3-phosphoshikimate 1-carboxyvinyltransferase, core GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
aroA: 3-phosphoshikimate 1-carboxyvinyltrans (db=HMMTigr db_id=TIGR01356 from=7 to=361 evalue=9.7e-98 interpro_id=IPR006264 interpro_description=3-phosphoshikimate 1-carboxyvinyltransferase, subgroup GO=Molecular Function: 3-phosphoshikimate 1-carboxyvinyltransferase activity (GO:0003866))
ACD41_115_9

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comp(6024..6977)
DNA (954bp) protein (318aa)
3-dehydroquinate synthase
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=81)
seg (db=Seg db_id=seg from=60 to=76)
aroB: 3-dehydroquinate synthase (db=HMMTigr db_id=TIGR01357 from=3 to=311 evalue=2.4e-114 interpro_id=IPR016037 interpro_description=3-dehydroquinate synthase AroB, subgroup GO=Molecular Function: 3-dehydroquinate synthase activity (GO:0003856), Cellular Component: cytoplasm (GO:0005737), Biological Process: aromatic amino acid family biosynthetic process (GO:0009073))
ACD41_115_10

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comp(6953..7663)
DNA (711bp) protein (237aa)
Tryptophan synthase n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NV63_9DELT (db=UNIREF evalue=3.0e-45 bit_score=185.0 identity=45.0 coverage=89.4514767932489)
trpA; tryptophan synthase subunit alpha
TRP_SYNTHASE_ALPHA (db=PatternScan db_id=PS00167 from=32 to=45 evalue=0.0 interpro_id=IPR018204 interpro_description=Tryptophan synthase, alpha chain, active site)
Ribulose-phoshate binding barrel (db=superfamily db_id=SSF51366 from=1 to=231 evalue=5.3e-58 interpro_id=IPR011060 interpro_description=Ribulose-phosphate binding barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD41_115_11

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comp(7660..8835)
DNA (1176bp) protein (392aa)
Tryptophan synthase, beta subunit n=1 Tax=Rhodospirillum centenum SW RepID=B6IV77_RHOCS (db=UNIREF evalue=3.0e-134 bit_score=481.0 identity=59.08 coverage=96.1734693877551)
tryptophan synthase subunit beta (EC:4.2.1.20)
tryptophan synthase subunit beta (EC:4.2.1.20)
TRP_SYNTHASE_BETA (db=PatternScan db_id=PS00168 from=92 to=106 evalue=0.0 interpro_id=IPR006653 interpro_description=Tryptophan synthase, beta chain, conserved site GO=Molecular Function: tryptophan synthase activity (GO:0004834), Biological Process: tryptophan metabolic process (GO:0006568))
ACD41_115_12

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comp(8810..9397)
DNA (588bp) protein (196aa)
trpF; phosphoribosyl anthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Streptococcus infantarius subsp. infantarius ATCC BAA-102 RepID=B1SDF1_9STRE (db=UNIREF evalue=6.0e-21 bit_score=103.0 identity=35.5 coverage=92.3469387755102)
seg (db=Seg db_id=seg from=12 to=20)
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=1 to=194 evalue=3.2e-36 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD41_115_13

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comp(9394..10014)
DNA (621bp) protein (207aa)
trpC; indole-3-glycerol phosphate synthase (EC:4.1.1.48)
IGPS (db=PatternScan db_id=PS00614 from=12 to=30 evalue=0.0 interpro_id=IPR001468 interpro_description=Indole-3-glycerol phosphate synthase, conserved site GO=Molecular Function: indole-3-glycerol-phosphate synthase activity (GO:0004425), Biological Process: tryptophan metabolic process (GO:0006568))
IGPS (db=HMMPfam db_id=PF00218 from=10 to=205 evalue=1.9e-65 interpro_id=IPR013798 interpro_description=Indole-3-glycerol phosphate synthase)
INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE (db=HMMPanther db_id=PTHR22854:SF2 from=7 to=205 evalue=5.5e-65)
ACD41_115_14

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comp(9971..10822)
DNA (852bp) protein (284aa)
anthranilate phosphoribosyltransferase
seg (db=Seg db_id=seg from=29 to=41)
Glycos_transf_3 (db=HMMPfam db_id=PF00591 from=52 to=273 evalue=1.4e-66 interpro_id=IPR000312 interpro_description=Glycosyl transferase, family 3 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757))
GMP SYNTHASE-RELATED (db=HMMPanther db_id=PTHR11922 from=30 to=238 evalue=1.9e-65)
ACD41_115_15

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comp(10819..11397)
DNA (579bp) protein (193aa)
para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II
GMP SYNTHASE-RELATED (db=HMMPanther db_id=PTHR11922 from=4 to=191 evalue=2.0e-74)
trpG_papA: glutamine amidotransferase of a (db=HMMTigr db_id=TIGR00566 from=4 to=191 evalue=2.6e-62 interpro_id=IPR006221 interpro_description=Anthranilate synthase, glutamine amidotransferase domain GO=Molecular Function: anthranilate synthase activity (GO:0004049), Biological Process: metabolic process (GO:0008152))
no description (db=Gene3D db_id=G3DSA:3.40.50.880 from=2 to=189 evalue=9.0e-54)
ACD41_115_16

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comp(11394..12764)
DNA (1371bp) protein (457aa)
anthranilate synthase subunit I
AMINOBENZOATE/ANTHRANILATE SYNTHASE (db=HMMPanther db_id=PTHR11236 from=105 to=452 evalue=9.2e-132 interpro_id=IPR005801 interpro_description=ADC synthase GO=Biological Process: biosynthetic process (GO:0009058))
ANTHRANILATE SYNTHASE COMPONENT I (db=HMMPanther db_id=PTHR11236:SF9 from=105 to=452 evalue=9.2e-132)
ADC synthase (db=superfamily db_id=SSF56322 from=1 to=452 evalue=4.9e-124 interpro_id=IPR005801 interpro_description=ADC synthase GO=Biological Process: biosynthetic process (GO:0009058))
ACD41_115_17

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comp(12780..13784)
DNA (1005bp) protein (335aa)
aroF; 3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
aroF; 3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
Strongly similar to 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3V0_9BACT (db=UNIREF evalue=1.0e-89 bit_score=333.0 identity=56.59 coverage=99.4029850746269)
seg (db=Seg db_id=seg from=278 to=295)
ACD41_115_18

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comp(13993..14457)
DNA (465bp) protein (155aa)
nucleoside-diphosphate kinase (EC:2.7.4.6)
no description (db=HMMSmart db_id=SM00562 from=2 to=139 evalue=1.5e-65 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase, core GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:0006241))
Nucleoside diphosphate kinase, NDK (db=superfamily db_id=SSF54919 from=1 to=150 evalue=1.1e-50 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase, core GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:0006241))
NDK (db=HMMPfam db_id=PF00334 from=3 to=136 evalue=2.0e-49 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase, core GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:0006241))
ACD41_115_19

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comp(14454..14822)
DNA (369bp) protein (123aa)
Two component transcriptional regulator, winged helix
Response regulator containing a CheY-like receiver domain and an HD-GYP domain (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V4R9_9AQUI (db=UNIREF evalue=6.0e-21 bit_score=103.0 identity=50.49 coverage=82.9268292682927)
CheY-like (db=superfamily db_id=SSF52172 from=1 to=121 evalue=1.3e-32 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=2 to=116 evalue=1.8e-30 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD41_115_20

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comp(14843..16255)
DNA (1413bp) protein (471aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Methylococcus capsulatus RepID=GATA_METCA (db=UNIREF evalue=6.0e-132 bit_score=474.0 identity=53.83 coverage=99.1507430997877)
seg (db=Seg db_id=seg from=141 to=155)
ACD41_115_21

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comp(16261..16557)
DNA (297bp) protein (99aa)
glutamyl-tRNA(Gln) amidotransferase subunit C
Glu-tRNAGln amidotransferase C subunit (db=superfamily db_id=SSF141000 from=2 to=93 evalue=1.8e-27)
gatC: glutamyl-tRNA(Gln) and/or aspartyl-tRN (db=HMMTigr db_id=TIGR00135 from=3 to=95 evalue=6.5e-27 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
Glu-tRNAGln (db=HMMPfam db_id=PF02686 from=19 to=90 evalue=2.9e-24 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
Displaying 21 items

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