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ACD41_142

Alias: ACD41_92895.10976.13

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD41_142_1

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2..247
DNA (246bp) protein (82aa)
FDX-ACB (db=HMMPfam db_id=PF03147 from=2 to=80 evalue=2.4e-14 interpro_id=IPR005121 interpro_description=Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826), Molecular Function: ATP binding (GO:0005524), Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432), Biological Process: tRNA processing (GO:0
Anticodon-binding domain of PheRS (db=superfamily db_id=SSF54991 from=3 to=80 evalue=3.4e-14 interpro_id=IPR005121 interpro_description=Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826), Molecular Function: ATP binding (GO:0005524), Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432), Biological
no description (db=HMMSmart db_id=SM00896 from=1 to=80 evalue=5.6e-10 interpro_id=IPR005121 interpro_description=Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826), Molecular Function: ATP binding (GO:0005524), Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432), Biological Process: tRNA processi
no description (db=Gene3D db_id=G3DSA:3.30.70.380 from=3 to=74 evalue=7.8e-09 interpro_id=IPR005121 interpro_description=Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826), Molecular Function: ATP binding (GO:0005524), Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432), Biological Process: tRNA
ACD41_142_2

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253..2244
DNA (1992bp) protein (664aa)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDG8_THET1 (db=UNIREF evalue=0.0 bit_score=696.0 identity=58.97 coverage=96.2349397590361)
seg (db=Seg db_id=seg from=567 to=590)
ACD41_142_3

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2506..2814
DNA (309bp) protein (103aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=71 to=93)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
ACD41_142_4

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2996..3187
DNA (192bp) protein (64aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
SecE (db=HMMPfam db_id=PF00584 from=5 to=59 evalue=3.8e-19 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=5 to=61 evalue=2.7e-16 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_142_5

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3180..3725
DNA (546bp) protein (182aa)
nusG; transcription antitermination factor
NUSG (db=PatternScan db_id=PS01014 from=164 to=173 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=12 to=181 evalue=1.5e-79 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00738 from=9 to=117 evalue=2.5e-49 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
ACD41_142_6

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3878..4207
DNA (330bp) protein (110aa)
50S ribosomal protein L11
RIBOSOMAL_L11 (db=PatternScan db_id=PS00359 from=94 to=109 evalue=0.0 interpro_id=IPR020785 interpro_description=Ribosomal protein L11, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=2 to=109 evalue=3.1e-59 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=HMMSmart db_id=SM00649 from=2 to=108 evalue=1.1e-51 interpro_id=IPR000911 interpro_description=Ribosomal protein L11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD41_142_7

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4217..4903
DNA (687bp) protein (229aa)
rplA; 50S ribosomal protein L1
seg (db=Seg db_id=seg from=84 to=97)
rplA_bact: ribosomal protein L1 (db=HMMTigr db_id=TIGR01169 from=5 to=228 evalue=3.3e-110 interpro_id=IPR005878 interpro_description=Ribosomal protein L1, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal protein, L1p/L1a/L10e/organellar L1 types (db=HMMPIR db_id=PIRSF002155 from=1 to=227 evalue=3.8e-88 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
ACD41_142_8

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4916..5338
DNA (423bp) protein (141aa)
putative dCMP deaminase
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=72 to=107 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
dCMP deaminase (db=HMMPIR db_id=PIRSF006019 from=1 to=140 evalue=1.7e-51 interpro_id=IPR016473 interpro_description=dCMP deaminase GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
DEOXYCYTIDYLATE DEAMINASE-RELATED (db=HMMPanther db_id=PTHR11086 from=5 to=137 evalue=1.2e-43 interpro_id=IPR015517 interpro_description=Cytidine deaminase)
ACD41_142_9

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5342..5887
DNA (546bp) protein (182aa)
hypothetical protein (db=KEGG evalue=3.0e-11 bit_score=71.2 identity=31.21 coverage=74.7252747252747)
coiled-coil (db=Coil db_id=coil from=134 to=155 evalue=NA)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=177 evalue=1.6e-11)
Uncharacterized protein {ECO:0000313|EMBL:EKD78263.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD41_142_10

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5863..7521
DNA (1659bp) protein (553aa)
Putative transmembrane peptidase n=1 Tax=Polaribacter irgensii 23-P RepID=A4BYG1_9FLAO (db=UNIREF evalue=1.0e-10 bit_score=72.4 identity=37.82 coverage=19.5298372513562)
peptidase M23 (db=KEGG evalue=1.0e-10 bit_score=71.6 identity=32.39 coverage=22.6039783001808)
seg (db=Seg db_id=seg from=315 to=327)
Peptidase_M23 (db=HMMPfam db_id=PF01551 from=37 to=138 evalue=1.6e-17 interpro_id=IPR016047 interpro_description=Peptidase M23)
ACD41_142_11

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7840..8172
DNA (333bp) protein (111aa)
Thymidylate kinase n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N760_9GAMM (db=UNIREF evalue=2.0e-11 bit_score=71.2 identity=38.32 coverage=90.0900900900901)
tmk; thymidylate kinase (EC:2.7.4.9)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=106 evalue=9.4e-17)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=105 evalue=3.6e-16)
ACD41_142_12

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8156..8578
DNA (423bp) protein (141aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
dut: dUTP diphosphatase (db=HMMTigr db_id=TIGR00576 from=2 to=140 evalue=2.1e-55 interpro_id=IPR008181 interpro_description=DeoxyUTP pyrophosphatase domain, subfamily 1, GO=Molecular Function: dUTP diphosphatase activity (GO:0004170), Biological Process: dUTP metabolic process (GO:0046080))
dUTPase-like (db=superfamily db_id=SSF51283 from=1 to=136 evalue=1.8e-46)
DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (db=HMMPanther db_id=PTHR11241 from=5 to=140 evalue=5.7e-46)
ACD41_142_13

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8575..9282
DNA (708bp) protein (236aa)
NAD synthetase (EC:6.3.1.5)
nadE: NAD+ synthetase (db=HMMTigr db_id=TIGR00552 from=1 to=234 evalue=1.2e-73 interpro_id=IPR003694 interpro_description=NAD synthase GO=Molecular Function: NAD+ synthase (glutamine-hydrolyzing) activity (GO:0003952), Molecular Function: ATP binding (GO:0005524), Biological Process: NAD biosynthetic process (GO:0009435))
NAD_synthase (db=HMMPfam db_id=PF02540 from=4 to=232 evalue=2.4e-72 interpro_id=IPR022310 interpro_description=NAD/GMP synthase)
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=3 to=234 evalue=7.8e-66)
ACD41_142_14

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9279..9743
DNA (465bp) protein (155aa)
Nicotinamide-nucleotide adenylyltransferase n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IGE4_ACIB4 (db=UNIREF evalue=1.0e-18 bit_score=95.1 identity=32.5 coverage=94.8387096774194)
nicotinamide-nucleotide adenylyltransferase (EC:2.7.7.1); K00952 nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] (db=KEGG evalue=2.0e-18 bit_score=94.7 identity=32.5 coverage=94.8387096774194)
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=3 to=148 evalue=1.6e-20 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
Nucleotidylyl transferase (db=superfamily db_id=SSF52374 from=1 to=148 evalue=1.0e-17)
ACD41_142_15

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9703..10632
DNA (930bp) protein (310aa)
Quinolinate synthetase complex, A subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C233_SPHTD (db=UNIREF evalue=6.0e-109 bit_score=397.0 identity=62.71 coverage=96.7741935483871)
quinolinate synthetase complex subunit A (EC:2.1.1.63)
quinolinate synthetase complex subunit A (EC:2.1.1.63)
seg (db=Seg db_id=seg from=291 to=302)
ACD41_142_16

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10642..11013
DNA (372bp) protein (124aa)
nadC; nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
seg (db=Seg db_id=seg from=73 to=85)
Nicotinate/Quinolinate PRTase N-terminal domain-like (db=superfamily db_id=SSF54675 from=15 to=109 evalue=1.0e-14)
no description (db=Gene3D db_id=G3DSA:3.90.1170.20 from=15 to=122 evalue=2.4e-14)
Displaying 16 items

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