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PLM4_65_coex_sep16_scaffold_77

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_77_1
RIFOXYB1_FULL_RIF_OD1_07_40_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

110..679
DNA (570bp) protein (190aa)
alias=gwe2_scaffold_601_13 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
Tax=RIFOXYB1_FULL_RIF_OD1_07_40_15_curated
PLM4_65_coex_sep16_scaffold_77_2
R_OD1_Nomurabacteria_40_20, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

688..1017
DNA (330bp) protein (110aa)
hypothetical protein bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
transcriptional coactivator/pterin dehydratase
Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_40_20_curated
PLM4_65_coex_sep16_scaffold_77_3
GWA1_OD1_39_13_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

1076..1624
DNA (549bp) protein (183aa)
Translation initiation factor IF-3 Tax=uncultured bacterium RepID=K2G016_9BACT
Translation initiation factor IF-3 {ECO:0000313|EMBL:KKR02545.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA1_39_13.;"
Translation initiation factor IF-3
PLM4_65_coex_sep16_scaffold_77_4
R_OD1_Yanofskybacteria_42_49, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

1638..1826
DNA (189bp) protein (63aa)
hypothetical protein Tax=candidate division OD1 bacterium SCGC AAA011-G05 RepID=UPI00037287A6
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_42_49_curated
PLM4_65_coex_sep16_scaffold_77_5
R_OD1_Yanofskybacteria_44_22, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


1908..2180
DNA (273bp) protein (91aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000369BE1B
50S ribosomal protein L20
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_22_curated
PLM4_65_coex_sep16_scaffold_77_trna_1
unknown

Not on your lists

2251..2322
DNA (72bp)
transferRNA Glu
PLM4_65_coex_sep16_scaffold_77_6
GWA1_OD1_39_13_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


2494..3528
DNA (1035bp) protein (345aa)
pmx:PERMA_0185 putative DNA-binding/iron metalloprotein/AP endonuclease (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
glycoprotease family metalloendopeptidase (EC:3.4.24.57)
Putative tRNA threonylcarbamoyladenosine biosynthesis protein Gcp {ECO:0000313|EMBL:KKR02548.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA1_39_13.;"
PLM4_65_coex_sep16_scaffold_77_7
R_OD1_44_24, Parcubacteria, Bacteria

Not on your lists


3542..5719
DNA (2178bp) protein (726aa)
hypothetical protein; K01873 valyl-tRNA synthetase [EC:6.1.1.9] bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
valyl-tRNA synthetase (EC:6.1.1.9)
Tax=RIFCSPLOWO2_01_FULL_OD1_44_24_curated
PLM4_65_coex_sep16_scaffold_77_8
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

5779..6561
DNA (783bp) protein (261aa)
Protease prsW bin=GWA1_ZB2_49_26 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_77_9
GWA1_OD1_39_13_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

6569..6970
DNA (402bp) protein (134aa)
Protein containing Heat shock protein Hsp20 protein {ECO:0000313|EMBL:KKR02552.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA1_39_13.;"
Protein containing Heat shock protein Hsp20 domain bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
heat shock protein Hsp20
PLM4_65_coex_sep16_scaffold_77_trna_17
unknown

Not on your lists

comp(7003..7086)
DNA (84bp)
transferRNA Leu
PLM4_65_coex_sep16_scaffold_77_10
GWC2_OD1_41_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(7184..7570)
DNA (387bp) protein (129aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2CCD1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKS24979.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWC2_41_9.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_77_11
R_OD1_40_30, Parcubacteria, Bacteria

Not on your lists

comp(7643..7975)
DNA (333bp) protein (111aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_40_30_curated
PLM4_65_coex_sep16_scaffold_77_12
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(7972..8403)
DNA (432bp) protein (144aa)
transmembrane_regions 5..27 bin=ACD66 species=ACD66 genus=ACD66 taxon_order=ACD66 taxon_class=ACD66 phylum=OD1 tax=ACD66 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
PLM4_65_coex_sep16_scaffold_77_13
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(8400..9512)
DNA (1113bp) protein (371aa)
id=3486307 bin=GWA1_ZB2_49_26 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_77_14
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(9560..10498)
DNA (939bp) protein (313aa)
id=2192970 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_77_15
R_OD1_Yanofskybacteria_43_32, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(10495..11823)
DNA (1329bp) protein (443aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1Z9K2_9BACT
family 1 extracellular solute-binding protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_32_curated
PLM4_65_coex_sep16_scaffold_77_16
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(11832..12434)
DNA (603bp) protein (201aa)
Putative uncharacterized protein Ta0630 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
type 11 methyltransferase
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
PLM4_65_coex_sep16_scaffold_77_17
R_OD1_Yanofskybacteria_38_22b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


comp(12586..15027)
DNA (2442bp) protein (814aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_38_22b_curated
PLM4_65_coex_sep16_scaffold_77_18
GWD2_OD1_39_48_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(15146..15499)
DNA (354bp) protein (118aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR23630.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWD2_39_48.;"
id=2177804 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
PLM4_65_coex_sep16_scaffold_77_19
R_OD1_Yanofskybacteria_41_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(15503..16243)
DNA (741bp) protein (247aa)
hypothetical protein bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_11_curated
PLM4_65_coex_sep16_scaffold_77_20
R_OD1_Yanofskybacteria_41_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


16308..17375
DNA (1068bp) protein (356aa)
RNA binding S1 protein Tax=uncultured bacterium RepID=K2F0L5_9BACT
30S ribosomal protein S1
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_11_curated
PLM4_65_coex_sep16_scaffold_77_21
R_OD1_Yanofskybacteria_38_22b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

17468..19309
DNA (1842bp) protein (614aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_38_22b_curated
PLM4_65_coex_sep16_scaffold_77_trna_2
unknown

Not on your lists

19341..19414
DNA (74bp)
transferRNA Ile
PLM4_65_coex_sep16_scaffold_77_trna_3
unknown

Not on your lists

19419..19492
DNA (74bp)
transferRNA Val
PLM4_65_coex_sep16_scaffold_77_22
R_OD1_Yanofskybacteria_43_32, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

19498..20193
DNA (696bp) protein (232aa)
Pseudouridine synthase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RluA family pseudouridine synthase
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_32_curated
PLM4_65_coex_sep16_scaffold_77_23
R_OD1_Yanofskybacteria_38_22b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


20267..20674
DNA (408bp) protein (136aa)
50S ribosomal protein L19 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
LSU ribosomal protein L19P
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_38_22b_curated
PLM4_65_coex_sep16_scaffold_77_trna_4
unknown

Not on your lists

20678..20761
DNA (84bp)
transferRNA Leu
PLM4_65_coex_sep16_scaffold_77_trna_5
unknown

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20844..20917
DNA (74bp)
transferRNA Val
PLM4_65_coex_sep16_scaffold_77_trna_6
unknown

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20963..21034
DNA (72bp)
transferRNA Phe
Displaying items 1-30 of 96 in total

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