ggKbase home page

PLM4_65_coex_sep16_scaffold_128

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_128_1
R_OD1_Yanofskybacteria_44_17, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(1..771)
DNA (771bp) protein (257aa)
Probable endonuclease 4 bin=GWA2_CPR4_42_17 species=ACD5 genus=ACD5 taxon_order=ACD5 taxon_class=ACD5 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
putative endonuclease 4
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_17_curated
PLM4_65_coex_sep16_scaffold_128_2
GWB1_OD1_37_5, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(784..1143)
DNA (360bp) protein (120aa)
UPF0102 protein Despr_2383 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RIU7_DESPD
Uncharacterized protein {ECO:0000313|EMBL:KKQ34722.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_37_5.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_128_3
R_OD1_Yanofskybacteria_39_8b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

1533..2534
DNA (1002bp) protein (334aa)
hypothetical protein Tax=candidate division OD1 bacterium SCGC AAA011-G05 RepID=UPI000362142D
cell wall endopeptidase, family M23/M37
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_39_8b_curated
PLM4_65_coex_sep16_scaffold_128_4
GWA1_OD1_39_13_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(2588..4207)
DNA (1620bp) protein (540aa)
Mg chelatase, subunit ChlI {ECO:0000313|EMBL:KKR02646.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA1_39_13.;"
Mg chelatase, subunit ChlI bin=GWC2_OD1_43_27 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Mg chelatase, subunit ChlI
PLM4_65_coex_sep16_scaffold_128_5
R_OD1_Yanofskybacteria_42_49, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(4224..4592)
DNA (369bp) protein (123aa)
Sporulation protein, yteA family bin=GWA2_CPR4_42_17 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
DksA; DnaK suppressor protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_42_49_curated
PLM4_65_coex_sep16_scaffold_128_6
GWF2_OD1_41_8_partial, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(4948..5982)
DNA (1035bp) protein (345aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS24933.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWF2_41_8.;"
PLM4_65_coex_sep16_scaffold_128_7
R_OD1_Yanofskybacteria_45_18, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(6324..7868)
DNA (1545bp) protein (515aa)
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPLOWO2_02_FULL_OD1_Yanofskybacteria_45_18_curated
PLM4_65_coex_sep16_scaffold_128_8
unknown

Not on your lists

comp(8687..9799)
DNA (1113bp) protein (371aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_128_9
R_OD1_Yanofskybacteria_44_88, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(9826..10437)
DNA (612bp) protein (204aa)
Putative uncharacterized protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_44_88_curated
PLM4_65_coex_sep16_scaffold_128_10
R_OD1_Yanofskybacteria_43_32, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

11207..12121
DNA (915bp) protein (305aa)
Tyrosine recombinase XerD bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
putative Tyrosine recombinase xerD
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_32_curated
PLM4_65_coex_sep16_scaffold_128_11
R_OD1_Yanofskybacteria_49_25, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

12215..12760
DNA (546bp) protein (182aa)
transmembrane_regions 7..29 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_49_25_curated
PLM4_65_coex_sep16_scaffold_128_12
Microgenomates bacterium GW2011_GWB1_44_8, Microgenomates, Bacteria

Not on your lists

comp(13144..14196)
DNA (1053bp) protein (351aa)
Uncharacterized protein Tax=Bacteroides sp. D2 RepID=E5CDU5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KKT77087.1}; species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWB1_44_8.;"
PLM4_65_coex_sep16_scaffold_128_13
Microgenomates bacterium GW2011_GWB1_44_8, Microgenomates, Bacteria

Not on your lists

comp(14199..14417)
DNA (219bp) protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT77086.1}; species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWB1_44_8.;"
PLM4_65_coex_sep16_scaffold_128_14
RIFOXYB1_FULL_RIF_OD1_06_38_37_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(14427..15026)
DNA (600bp) protein (200aa)
HNH endonuclease domain protein Tax=Campylobacter upsaliensis RM3195 RepID=Q4HQB8_CAMUP
HNH endonuclease domain-containing protein
Tax=RIFOXYB1_FULL_RIF_OD1_06_38_37_curated
PLM4_65_coex_sep16_scaffold_128_15
R_Elusimicrobia_39_32, Elusimicrobia, Bacteria

Not on your lists

comp(15032..15859)
DNA (828bp) protein (276aa)
DNA methylase N-4/N-6 domain-containing protein; K07319 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Elusimicrobia_39_32_curated
PLM4_65_coex_sep16_scaffold_128_16
Parcubacteria bacterium GW2011_GWA2_47_9, Parcubacteria, Bacteria

Not on your lists

comp(15864..16064)
DNA (201bp) protein (67aa)
Transcriptional regulator, XRE family {ECO:0000313|EMBL:KKU85292.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_9.;"
transcriptional regulator, XRE family bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
regulatory protein
PLM4_65_coex_sep16_scaffold_128_17

Not on your lists

16738..18450
DNA (1713bp) protein (571aa)
resolvase domain-containing protein bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Resolvase protein {ECO:0000313|EMBL:EKD32865.1}; Flags: Fragment;; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
recombinase
PLM4_65_coex_sep16_scaffold_128_trna_6
unknown

Not on your lists

comp(18275..18346)
DNA (72bp)
transferRNA Arg
PLM4_65_coex_sep16_scaffold_128_trna_5
unknown

Not on your lists

comp(18363..18445)
DNA (83bp)
transferRNA Leu
PLM4_65_coex_sep16_scaffold_128_trna_4
unknown

Not on your lists

comp(18459..18531)
DNA (73bp)
transferRNA Cys
PLM4_65_coex_sep16_scaffold_128_18
GWB1_OD1_45_11_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(18534..20069)
DNA (1536bp) protein (512aa)
Translation initiation factor IF-2 {ECO:0000313|EMBL:KKT90028.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWB1_45_11.;"
Translation initiation factor IF-2 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
translation initiation factor IF-2
PLM4_65_coex_sep16_scaffold_128_19

Not on your lists

comp(20159..21295)
DNA (1137bp) protein (379aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU49441.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_47_10.;"
PLM4_65_coex_sep16_scaffold_128_20
unknown

Not on your lists

21378..22445
DNA (1068bp) protein (356aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_128_21
unknown

Not on your lists

comp(22547..22672)
DNA (126bp) protein (42aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_128_22
GWC1_CPR1_49_13, CPR1, Bacteria

Not on your lists

comp(22738..22974)
DNA (237bp) protein (79aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW05975.1}; species="Bacteria; candidate division CPR1.;" source="candidate division CPR1 bacterium GW2011_GWC1_49_13.;"
PLM4_65_coex_sep16_scaffold_128_23
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(23119..23571)
DNA (453bp) protein (151aa)
Predicted protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_128_24
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(23582..24811)
DNA (1230bp) protein (410aa)
ABC transporter, permease protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
multidrug ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_128_25
GWF1_OD1_44_227, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(24808..25515)
DNA (708bp) protein (236aa)
ABC-type transport system bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
ABC-type transport system {ECO:0000313|EMBL:KKT53123.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWF1_44_227.;"
ABC transporter
PLM4_65_coex_sep16_scaffold_128_26
GWD2_OD1_39_48_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(25526..27244)
DNA (1719bp) protein (573aa)
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:KKR23794.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWD2_39_48.;"
Efflux transporter, RND family, MFP subunit bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Efflux transporter, RND family, MFP subunit
PLM4_65_coex_sep16_scaffold_128_27
R_OD1_Yanofskybacteria_38_22b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(27288..27779)
DNA (492bp) protein (164aa)
id=1916089 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_38_22b_curated
Displaying items 1-30 of 71 in total

View Taxonomy