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PLM4_65_coex_sep16_scaffold_10267

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_10267_1
R_OD1_Yanofskybacteria_42_49, Yanofskybacteria, Parcubacteria, Bacteria

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comp(1..825)
DNA (825bp) protein (275aa)
id=1924449 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_42_49_curated
PLM4_65_coex_sep16_scaffold_10267_2
GWA1_OD1_39_13_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(845..1399)
DNA (555bp) protein (185aa)
Repair protein RecO protein {ECO:0000313|EMBL:KKR02535.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA1_39_13.;"
DNA repair protein RecO bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
DNA repair protein RecO
PLM4_65_coex_sep16_scaffold_10267_3
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(1401..1979)
DNA (579bp) protein (193aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2GBZ4_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
PLM4_65_coex_sep16_scaffold_10267_4
R_RIF_OD1_06_34_9, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(1976..2413)
DNA (438bp) protein (146aa)
pyridoxamine 5'-phosphate oxidase-related FMN-binding bin=ACD50 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_34_9_curated
PLM4_65_coex_sep16_scaffold_10267_5
GWC2_OD1_41_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(2413..3465)
DNA (1053bp) protein (351aa)
Isoleucine-tRNA ligase {ECO:0000313|EMBL:KKS26589.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWC2_41_9.;"
Isoleucine--tRNA ligase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
isoleucyl-tRNA synthetase
PLM4_65_coex_sep16_scaffold_10267_6
GWC2_OD1_41_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(3549..5873)
DNA (2325bp) protein (775aa)
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine-tRNA ligase {ECO:0000313|EMBL:KKS26589.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWC2_41_9.;"
Isoleucine--tRNA ligase bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
PLM4_65_coex_sep16_scaffold_10267_7
unknown

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5960..6385
DNA (426bp) protein (142aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_10267_8
R_OD1_Yanofskybacteria_50_12, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


comp(6369..7028)
DNA (660bp) protein (220aa)
lba:Lebu_1977 arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Arginyl-tRNA synthetase (EC:6.1.1.19)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_50_12_curated
PLM4_65_coex_sep16_scaffold_10267_9
R_OD1_45_11, Parcubacteria, Bacteria

Not on your lists

comp(7111..7581)
DNA (471bp) protein (157aa)
arginine--tRNA ligase (EC:6.1.1.19)
Arginine--tRNA ligase Tax=Brevibacillus laterosporus LMG 15441 RepID=F7U1M0_BRELA
Suspect SCG annotation. See neighboring gene [PLM4_65_coex_sep16_scaffold_10267_8].
Tax=RIFCSPLOWO2_02_FULL_OD1_45_11_curated
PLM4_65_coex_sep16_scaffold_10267_10
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(7536..7970)
DNA (435bp) protein (145aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase bin=GWC2_Deltaproteobacteria_56_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
PLM4_65_coex_sep16_scaffold_10267_11
GWF2_OD1_41_8_partial, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(7983..8204)
DNA (222bp) protein (74aa)
putative 3-methyladenine DNA glycosylase (EC:3.2.2.-)
Putative 3-methyladenine DNA glycosylase Tax=uncultured Acidobacteria bacterium RepID=H5SFU8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKS24053.1}; Flags: Fragment;; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWF2_41_8.;"
PLM4_65_coex_sep16_scaffold_10267_12
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

8389..9444
DNA (1056bp) protein (352aa)
Protease Do {ECO:0000313|EMBL:KKT82773.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
Protease Do bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
protease Do
PLM4_65_coex_sep16_scaffold_10267_13
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

9446..9886
DNA (441bp) protein (147aa)
SsrA-binding protein bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
smpB; SsrA-binding protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM4_65_coex_sep16_scaffold_10267_14
unknown

Not on your lists

10218..10670
DNA (453bp) protein (151aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_10267_15
unknown

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comp(10741..11049)
DNA (309bp) protein (103aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_10267_16

Not on your lists

12071..12583
DNA (513bp) protein (171aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU54957.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWE2_47_10.;"
PLM4_65_coex_sep16_scaffold_10267_17
unknown

Not on your lists

comp(12627..12785)
DNA (159bp) protein (53aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_10267_18
R_OD1_Yanofskybacteria_47_9b, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

12921..13592
DNA (672bp) protein (224aa)
translation initiation factor IF-3; K02520 translation initiation factor IF-3 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
translation initiation factor IF-3
Tax=RIFCSPLOWO2_02_FULL_OD1_Yanofskybacteria_47_9b_curated
PLM4_65_coex_sep16_scaffold_10267_19
R_OD1_Yanofskybacteria_50_12, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


13602..13946
DNA (345bp) protein (115aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000369BE1B
50S ribosomal protein L20
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_50_12_curated
PLM4_65_coex_sep16_scaffold_10267_trna_1
unknown

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14019..14093
DNA (75bp)
transferRNA Glu
PLM4_65_coex_sep16_scaffold_10267_20
unknown

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14096..14521
DNA (426bp) protein (142aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_10267_21
GWA1_OD1_39_13_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


14518..15585
DNA (1068bp) protein (356aa)
tRNA N6-adenosine threonylcarbamoyltransferase Tax=uncultured bacterium RepID=K2F200_9BACT
Putative tRNA threonylcarbamoyladenosine biosynthesis protein Gcp {ECO:0000313|EMBL:KKR02548.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA1_39_13.;"
DNA-binding/iron metalloprotein/AP endonuclease
PLM4_65_coex_sep16_scaffold_10267_22
GWA2_OD1_44_10, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


15618..17675
DNA (2058bp) protein (686aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000369942C
Valine-tRNA ligase {ECO:0000313|EMBL:KKT27915.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_10.;"
valyl-tRNA synthetase
Displaying 23 items

View Taxonomy