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ACD43_85

Alias: ACD43_120025.18909.7

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD43_85_1

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244..435
DNA (192bp) protein (64aa)
seg (db=Seg db_id=seg from=16 to=34)
seg (db=Seg db_id=seg from=42 to=60)
Uncharacterized protein {ECO:0000313|EMBL:EKD76651.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_85_2

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419..1090
DNA (672bp) protein (224aa)
hypothetical protein
Transcriptional regulator, XRE family n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVZ7_9FIRM (db=UNIREF evalue=7.0e-11 bit_score=70.9 identity=41.89 coverage=32.5892857142857)
coiled-coil (db=Coil db_id=coil from=6 to=27 evalue=NA)
seg (db=Seg db_id=seg from=109 to=128)
ACD43_85_3

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1102..2178
DNA (1077bp) protein (359aa)
recA protein (EC:3.6.3.8)
recA protein (EC:3.6.3.8)
RecA protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTF3_9BACT (db=UNIREF evalue=4.0e-117 bit_score=424.0 identity=61.81 coverage=94.7075208913649)
seg (db=Seg db_id=seg from=62 to=72)
ACD43_85_4

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comp(2382..2708)
DNA (327bp) protein (109aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
seg (db=Seg db_id=seg from=66 to=89)
ACD43_85_5

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comp(2853..4493)
DNA (1641bp) protein (547aa)
groEL; molecular chaperone GroEL
groEL; molecular chaperone GroEL
60 kDa chaperonin n=1 Tax=Deferribacter desulfuricans SSM1 RepID=D3PAX8_DEFDS (db=UNIREF evalue=0.0 bit_score=642.0 identity=64.96 coverage=95.9780621572212)
seg (db=Seg db_id=seg from=167 to=178)
ACD43_85_6

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comp(4512..4790)
DNA (279bp) protein (93aa)
chaperonin Cpn10
10 kDa chaperonin n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TSQ6_9FLAO (db=UNIREF evalue=8.0e-17 bit_score=89.4 identity=45.56 coverage=94.6236559139785)
no description (db=HMMSmart db_id=SM00883 from=2 to=90 evalue=9.7e-35 interpro_id=IPR001476 interpro_description=Chaperonin Cpn10, subgroup GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: protein folding (GO:0006457))
GroES-like (db=superfamily db_id=SSF50129 from=1 to=92 evalue=1.9e-26 interpro_id=IPR011032 interpro_description=GroES-like)
ACD43_85_7

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comp(4901..6166)
DNA (1266bp) protein (422aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=390 to=407)
transmembrane_regions (db=TMHMM db_id=tmhmm from=369 to=386)
transmembrane_regions (db=TMHMM db_id=tmhmm from=334 to=356)
transmembrane_regions (db=TMHMM db_id=tmhmm from=300 to=319)
ACD43_85_8

Not on your lists

6287..7891
DNA (1605bp) protein (535aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKD76658.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD43_120025.18909.7G0008,ACD43_120025.18909.7_8,ACD43_C00085G00008 id=56845 tax=ACD43 species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=OD1, not OD1-i organism_desc=OD1
ACD43_85_9

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8068..9972
DNA (1905bp) protein (635aa)
seg (db=Seg db_id=seg from=93 to=103)
seg (db=Seg db_id=seg from=224 to=238)
Uncharacterized protein {ECO:0000313|EMBL:EKD76659.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_85_10

Not on your lists

comp(9975..10889)
DNA (915bp) protein (305aa)
hypothetical protein (db=KEGG evalue=2.0e-14 bit_score=83.2 identity=30.56 coverage=66.5573770491803)
seg (db=Seg db_id=seg from=82 to=94)
Uncharacterized protein {ECO:0000313|EMBL:EKD76660.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD43_120025.18909.7G0010,ACD43_120025.18909.7_10,ACD43_C00085G00010 id=56851 tax=ACD43 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi organism_group=OD1, not OD1-i organism_desc=OD1
ACD43_85_11

Not on your lists

comp(11109..11828)
DNA (720bp) protein (240aa)
Triosephosphate isomerase n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY88_9CLOT (db=UNIREF evalue=1.0e-67 bit_score=259.0 identity=51.01 coverage=99.1666666666667)
Triose-phosphate isomerase (EC:5.3.1.1)
TIM_1 (db=PatternScan db_id=PS00171 from=163 to=173 evalue=0.0 interpro_id=IPR020861 interpro_description=Triosephosphate isomerase, active site)
TRIOSEPHOSPHATE ISOMERASE (db=HMMPanther db_id=PTHR21139 from=1 to=239 evalue=2.5e-106 interpro_id=IPR000652 interpro_description=Triosephosphate isomerase GO=Molecular Function: triose-phosphate isomerase activity (GO:0004807), Biological Process: metabolic process (GO:0008152))
ACD43_85_12

Not on your lists

comp(11838..12590)
DNA (753bp) protein (251aa)
adenosylmethionine-8-amino-7-oxononanoate aminotransferase
coiled-coil (db=Coil db_id=coil from=17 to=38 evalue=NA)
AA_TRANSFER_CLASS_3 (db=PatternScan db_id=PS00600 from=73 to=110 evalue=0.0 interpro_id=IPR005814 interpro_description=Aminotransferase class-III GO=Molecular Function: transaminase activity (GO:0008483), Molecular Function: pyridoxal phosphate binding (GO:0030170))
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=24 to=247 evalue=9.2e-59 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
ACD43_85_13

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13083..13355
DNA (273bp) protein (91aa)
seg (db=Seg db_id=seg from=59 to=87)
seg (db=Seg db_id=seg from=5 to=16)
rpmF_bact: ribosomal protein L32 (db=HMMTigr db_id=TIGR01031 from=2 to=56 evalue=2.0e-16 interpro_id=IPR002677 interpro_description=Ribosomal protein L32p GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal_L32p (db=HMMPfam db_id=PF01783 from=3 to=54 evalue=3.8e-16 interpro_id=IPR002677 interpro_description=Ribosomal protein L32p GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
ACD43_85_14

Not on your lists

13363..13788
DNA (426bp) protein (142aa)
putative transcription termination factor
nusB: transcription antitermination factor N (db=HMMTigr db_id=TIGR01951 from=3 to=135 evalue=4.0e-50 interpro_id=IPR011605 interpro_description=NusB antitermination factor GO=Molecular Function: transcription termination factor activity (GO:0003715), Biological Process: transcription termination (GO:0006353))
NusB (db=HMMPfam db_id=PF01029 from=7 to=133 evalue=4.8e-38 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
NusB-like (db=superfamily db_id=SSF48013 from=3 to=131 evalue=5.7e-35 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD43_85_15

Not on your lists

13781..14506
DNA (726bp) protein (242aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C419_9CLOT (db=UNIREF evalue=4.0e-45 bit_score=184.0 identity=46.43 coverage=90.495867768595)
RNASE_3_1 (db=PatternScan db_id=PS00517 from=55 to=63 evalue=0.0 interpro_id=IPR000999 interpro_description=Ribonuclease III GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: RNA processing (GO:0006396))
RNaseIII: ribonuclease III (db=HMMTigr db_id=TIGR02191 from=19 to=239 evalue=9.4e-88 interpro_id=IPR011907 interpro_description=Ribonuclease III, bacterial GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: rRNA catabolic process (GO:0016075))
ACD43_85_16

Not on your lists

14547..17282
DNA (2736bp) protein (912aa)
SMC domain-containing protein
Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7ANQ0_9BACE (db=UNIREF evalue=4.0e-58 bit_score=230.0 identity=30.94 coverage=56.359649122807)
coiled-coil (db=Coil db_id=coil from=357 to=392 evalue=NA)
coiled-coil (db=Coil db_id=coil from=282 to=303 evalue=NA)
ACD43_85_17

Not on your lists

comp(17272..18063)
DNA (792bp) protein (264aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=215 to=237)
transmembrane_regions (db=TMHMM db_id=tmhmm from=178 to=200)
transmembrane_regions (db=TMHMM db_id=tmhmm from=140 to=157)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=136)
ACD43_85_18

Not on your lists


18136..18486
DNA (351bp) protein (117aa)
hypothetical protein
Ribosomal protein S16 n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MB73_9PORP (db=UNIREF evalue=3.0e-13 bit_score=77.4 identity=48.68 coverage=64.1025641025641)
RIBOSOMAL_S16 (db=PatternScan db_id=PS00732 from=2 to=11 evalue=0.0 interpro_id=IPR020592 interpro_description=Ribosomal protein S16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S16 (db=HMMPanther db_id=PTHR12919 from=1 to=77 evalue=1.4e-22 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD43_85_19

Not on your lists

18571..18942
DNA (372bp) protein (124aa)
hypothetical protein
RNA-binding protein (Contains KH domain)-like protein (Fragment) n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSZ2_9BACT (db=UNIREF evalue=1.0e-18 bit_score=95.5 identity=60.0 coverage=59.6774193548387)
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=5 to=64 evalue=2.4e-07 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))
RNA-binding protein {ECO:0000313|EMBL:EKD76650.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 19 items

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