ggKbase home page

ACD43_99

Alias: ACD43_52109.5811.10

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD43_99_1

Not on your lists

205..1152
DNA (948bp) protein (316aa)
hypothetical protein
hypothetical protein
Integral membrane protein TerC n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GDR7_METPE (db=UNIREF evalue=5.0e-107 bit_score=390.0 identity=69.13 coverage=93.6708860759494)
seg (db=Seg db_id=seg from=97 to=116)
ACD43_99_2

Not on your lists

comp(1091..2545)
DNA (1455bp) protein (485aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=450 to=472)
transmembrane_regions (db=TMHMM db_id=tmhmm from=428 to=445)
transmembrane_regions (db=TMHMM db_id=tmhmm from=401 to=418)
transmembrane_regions (db=TMHMM db_id=tmhmm from=377 to=396)
ACD43_99_3

Not on your lists

2581..3330
DNA (750bp) protein (250aa)
hypothetical protein
seg (db=Seg db_id=seg from=5 to=19)
MoCo carrier protein-like (db=superfamily db_id=SSF102405 from=33 to=241 evalue=1.7e-59)
no description (db=Gene3D db_id=G3DSA:3.40.50.450 from=64 to=244 evalue=3.9e-53)
ACD43_99_4

Not on your lists

3278..4054
DNA (777bp) protein (259aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
seg (db=Seg db_id=seg from=244 to=253)
PSI_RLU (db=PatternScan db_id=PS01129 from=89 to=103 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=33 to=258 evalue=2.4e-52 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
ACD43_99_5

Not on your lists


4103..4408
DNA (306bp) protein (102aa)
rplS; 50S ribosomal protein L19
seg (db=Seg db_id=seg from=80 to=95)
Ribosomal_L19 (db=HMMPfam db_id=PF01245 from=2 to=95 evalue=9.3e-30 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L19 (db=HMMPanther db_id=PTHR15680 from=1 to=99 evalue=6.7e-23 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD43_99_6

Not on your lists

4488..5144
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Bacillus mycoides Rock1-4 RepID=C3AM03_BACMY (db=UNIREF evalue=2.0e-08 bit_score=62.8 identity=25.0 coverage=55.7077625570776)
seg (db=Seg db_id=seg from=59 to=71)
Homing endonucleases (db=superfamily db_id=SSF55608 from=104 to=215 evalue=9.7e-07)
Homing endonucleases (db=superfamily db_id=SSF55608 from=8 to=91 evalue=2.0e-05)
ACD43_99_7

Not on your lists

5443..5682
DNA (240bp) protein (80aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Uncharacterized protein {ECO:0000313|EMBL:EKD76110.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 7 items

View Taxonomy