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GD18-4_B1_scaffold_6998

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GD18-4_B1_scaffold_6998_trna_2
unknown

Not on your lists

comp(201..469)
DNA (269bp)
transferRNA Asp
GD18-4_B1_scaffold_6998_1
GWF2_OD1_39_8, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(614..1909)
DNA (1296bp) protein (432aa)
RNA polymerase sigma factor {ECO:0000313|EMBL:KKR31663.1}; TaxID=1618642 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWF2_39_8.;"
RNA polymerase sigma factor id=2110492 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RpoD subfamily RNA polymerase sigma-70 subunit
GD18-4_B1_scaffold_6998_2
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

comp(1938..3686)
DNA (1749bp) protein (583aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI00035CCCBD
Primase protein {ECO:0000313|EMBL:KKW01747.1}; TaxID=1618850 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
DNA primase
GD18-4_B1_scaffold_6998_3

Not on your lists

comp(3722..4054)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z1K2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD43141.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
protein of unknown function DUF59
GD18-4_B1_scaffold_6998_4
R_Peregrinibacteria_39_12, Peregrinibacteria, Bacteria

Not on your lists

comp(4051..4437)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A1W2_9BACT
NifU family SUF system FeS assembly protein
Tax=RIFCSPLOWO2_01_FULL_Peregrinibacteria_39_12_curated
GD18-4_B1_scaffold_6998_5

Not on your lists

comp(4445..5689)
DNA (1245bp) protein (415aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Cysteine desulfurase n=1 Tax=uncultured bacterium RepID=K1YLV5_9BACT
SufS subfamily cysteine desulfurase
GD18-4_B1_scaffold_6998_6
R_OD1_44_24, Parcubacteria, Bacteria

Not on your lists

comp(5665..6291)
DNA (627bp) protein (209aa)
sufD; putative protein SufD; K09015 Fe-S cluster assembly protein SufD id=5044489 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
SufBD protein
Tax=RIFCSPLOWO2_01_FULL_OD1_44_24_curated
GD18-4_B1_scaffold_6998_7
RIFOXYD1_FULL_OD1_Magasanikbacteria_40_23_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(6301..7560)
DNA (1260bp) protein (420aa)
Iron-regulated ABC transporter membrane component SufB; K09014 Fe-S cluster assembly protein SufB id=5090832 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Iron-regulated ABC transporter membrane component SufB
Tax=RIFOXYD1_FULL_OD1_Magasanikbacteria_40_23_curated
GD18-4_B1_scaffold_6998_8
Corynebacterium pseudodiphtheriticum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7730..8512)
DNA (783bp) protein (261aa)
iron ABC transporter ATP-binding protein n=1 Tax=Corynebacterium propinquum RepID=UPI0003753BDB
Iron ABC transporter ATP-binding protein {ECO:0000313|EMBL:ERJ42406.1}; TaxID=1381111 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium pseudodiphtheriticum 090104.;"
FeS assembly ATPase SufC
GD18-4_B1_scaffold_6998_9
R_Peregrinibacteria_39_12, Peregrinibacteria, Bacteria

Not on your lists

comp(8509..8982)
DNA (474bp) protein (158aa)
BadM/Rrf2 family transcriptional regulator id=5090834 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
BadM/Rrf2 family transcriptional regulator
Tax=RIFCSPLOWO2_01_FULL_Peregrinibacteria_39_12_curated
GD18-4_B1_scaffold_6998_10
R_RIF_OD1_03_48_11, RIF-OD1-3, Parcubacteria, Bacteria

Not on your lists

comp(9079..9537)
DNA (459bp) protein (153aa)
Predicted protein id=1916096 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_03_48_11_curated
GD18-4_B1_scaffold_6998_11

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comp(9530..10744)
DNA (1215bp) protein (405aa)
ABC transporter, permease protein {ECO:0000313|EMBL:KKT91094.1}; TaxID=1618914 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_45_13.;"
ABC transporter, permease protein id=4731804 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
ABC-type antimicrobial peptide transport system, permease component
GD18-4_B1_scaffold_6998_12
R_OD1_Azambacteria_44_14, Azambacteria, Parcubacteria, Bacteria

Not on your lists

comp(10741..11499)
DNA (759bp) protein (253aa)
ABC-type transport system id=4731803 bin=GWC2_OD1_43_27 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
ABC transporter-like protein
Tax=RIFCSPLOWO2_02_FULL_OD1_Azambacteria_44_14_curated
GD18-4_B1_scaffold_6998_13
R_OD1_46_26, Microgenomates, Bacteria

Not on your lists

comp(11468..13222)
DNA (1755bp) protein (585aa)
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein id=15190297 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RND family efflux transporter MFP subunit
Tax=RIFCSPLOWO2_01_FULL_OD1_46_26_curated
GD18-4_B1_scaffold_6998_14
R_Melainabacteria_34_12, Melainabacteria, Bacteria

Not on your lists

comp(13597..14130)
DNA (534bp) protein (178aa)
Tax=RIFCSPHIGHO2_02_FULL_Melainabacteria_34_12_curated
GD18-4_B1_scaffold_6998_15
GWF2_OD1_44_350, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(14179..15174)
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000365BBB0
Na+/Ca+ antiporter, CaCA family {ECO:0000313|EMBL:KKT68413.1}; TaxID=1619000 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_44_350.;"
CaCA family Na+/Ca+ antiporter
GD18-4_B1_scaffold_6998_16
RIFOXYC1_FULL_RIF_OD1_03_37_11_curated, RIF-OD1-3, Parcubacteria, Bacteria

Not on your lists

comp(15280..15543)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WLW7_9EURY
hypothetical protein
Tax=RIFOXYC1_FULL_RIF_OD1_03_37_11_curated
GD18-4_B1_scaffold_6998_17
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(15567..16874)
DNA (1308bp) protein (436aa)
CBS/transporter associated domain-containing protein; K03699 putative hemolysin id=5802158 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
Uncharacterized protein {ECO:0000313|EMBL:KKR05452.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
CBS/transporter associated domain-containing protein
GD18-4_B1_scaffold_6998_trna_1
unknown

Not on your lists

comp(17222..17306)
DNA (85bp)
transferRNA Ser
GD18-4_B1_scaffold_6998_18
GWF2_OD1_43_32, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(17284..17871)
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GVL5_9EURY id=3490 bin=ACD11 species=Candidatus Parvarchaeum acidophilus genus=Candidatus Parvarchaeum taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:KKT13594.1}; TaxID=1618643 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWF2_43_32.;"
GD18-4_B1_scaffold_6998_19
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

comp(18051..19205)
DNA (1155bp) protein (385aa)
hypothetical protein; K09760 DNA recombination protein RmuC id=5099966 bin=WS6_GWC1_33_20 species=WS6_GWE1_33_547 genus=WS6_GWE1_33_547 taxon_order=WS6_GWE1_33_547 taxon_class=WS6_GWE1_33_547 phylum=WS6 tax=WS6_GWC1_33_20 organism_group=WS6 (Doikabacteria)
Uncharacterized protein {ECO:0000313|EMBL:KKP81857.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
hypothetical protein
GD18-4_B1_scaffold_6998_20
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

19270..22023
DNA (2754bp) protein (918aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DUL3_9BACT
HAD superfamily ATPase
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
GD18-4_B1_scaffold_6998_21
R_OP11_Levybacteria_37_33, Levybacteria, Microgenomates, Bacteria

Not on your lists

21993..22601
DNA (609bp) protein (203aa)
hypothetical protein; K03975 membrane-associated protein id=35443 bin=ACD30 species=ACD30 genus=ACD30 taxon_order=ACD30 taxon_class=ACD30 phylum=OP11 tax=ACD30 organism_group=OP11 (Microgenomates) organism_desc=OP11
protein DedA (Protein DSG-1)
Tax=RIFCSPHIGHO2_01_FULL_OP11_Levybacteria_37_33_curated
GD18-4_B1_scaffold_6998_22
R_OD1_Magasanikbacteria_44_11, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22602..23636)
DNA (1035bp) protein (345aa)
nrdB; ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI00036AAF4B
Tax=RIFCSPLOWO2_02_FULL_OD1_Magasanikbacteria_44_11_curated
GD18-4_B1_scaffold_6998_23
R_OD1_Moranbacteria_55_24, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(23650..26523)
DNA (2874bp) protein (958aa)
ribonucleoside-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] id=5090883 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC:1.17.4.1)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Moranbacteria_55_24_curated
GD18-4_B1_scaffold_6998_24
RLO_OD1_Kaiserbacteria_50_28, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(26769..27737)
DNA (969bp) protein (323aa)
Thioredoxin reductase id=3423422 bin=GWA1_ZB2_49_26 species=Pyrolobus fumarii genus=Pyrolobus taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
thioredoxin reductase
Tax=RIFCSPLOWO2_12_FULL_OD1_Kaiserbacteria_50_28_curated
GD18-4_B1_scaffold_6998_25
R_OD1_Giovannonibacteria_46_20, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(27972..28211)
DNA (240bp) protein (80aa)
Putative glutaredoxin id=3423427 bin=GWA1_ZB2_49_26 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Giovannonibacteria_46_20_curated
GD18-4_B1_scaffold_6998_26
Desulfurivibrio alkaliphilus, Desulfurivibrio, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28328..28930)
DNA (603bp) protein (201aa)
PEBP family protein n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z5Z0_DESAT
PEBP family protein
PEBP family protein {ECO:0000313|EMBL:ADH84872.1}; TaxID=589865 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfurivibrio.;" source="Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2).;"
GD18-4_B1_scaffold_6998_27
R_RIF_OD1_13_49_12, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(28936..30084)
DNA (1149bp) protein (383aa)
Xaa-Pro aminopeptidase id=2619693 bin=GWC1_KAZAN_52_13 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_KAZAN_52_13 organism_group=Kazan
pepP; Xaa-Pro aminopeptidase
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_49_12_curated
GD18-4_B1_scaffold_6998_28
GWA2_OD1_42_41_partial, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(30130..31044)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036F891B
ADP-dependent (S)-NAD(P)H-hydrate dehydratase {ECO:0000313|EMBL:KKS59064.1}; TaxID=1618737 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_42_41.;"
carbohydrate kinase
Displaying items 1-30 of 36 in total

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