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S_p1_S3_170907_scaffold_213107

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_170907_scaffold_213107_1
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

216..1577
DNA (1362bp) protein (454aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037E6C2A
chromosomal replication initiator protein DnaA
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
S_p1_S3_170907_scaffold_213107_2
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

1801..2904
DNA (1104bp) protein (368aa)
DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA polymerase III, beta subunit
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
S_p1_S3_170907_scaffold_213107_3
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(2913..5477)
DNA (2565bp) protein (855aa)
putative penicillin-binding protein bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
S_p1_S3_170907_scaffold_213107_4
R_OD1_48_10, Parcubacteria, Bacteria

Not on your lists

5543..6706
DNA (1164bp) protein (388aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase bin=GWC1_OD1_38_17 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Tax=RIFCSPLOWO2_01_FULL_OD1_48_10_curated
S_p1_S3_170907_scaffold_213107_5
unknown

Not on your lists

comp(6757..6900)
DNA (144bp) protein (48aa)

This feature has no annotations

S_p1_S3_170907_scaffold_213107_6
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(6987..7463)
DNA (477bp) protein (159aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UFQ2_RUMA7
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
S_p1_S3_170907_scaffold_213107_7
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(7604..8140)
DNA (537bp) protein (179aa)
Probable transcriptional regulatory protein Despr_0673 bin=GWA2_OP3_53_43 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
S_p1_S3_170907_scaffold_213107_8
Parcubacteria bacterium GW2011_GWA2_47_9, Parcubacteria, Bacteria

Not on your lists

comp(8149..8649)
DNA (501bp) protein (167aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2GQ43_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKU85021.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_9.;"
hypothetical protein
S_p1_S3_170907_scaffold_213107_9
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(8651..8908)
DNA (258bp) protein (86aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
S_p1_S3_170907_scaffold_213107_10
Parcubacteria bacterium GW2011_GWA2_47_9, Parcubacteria, Bacteria

Not on your lists

comp(8905..9912)
DNA (1008bp) protein (336aa)
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000313|EMBL:KKU85019.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_9.;"
Holliday junction DNA helicase RuvB
S_p1_S3_170907_scaffold_213107_11
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(10134..11807)
DNA (1674bp) protein (558aa)
pilB1; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
pilB1; type IV-A pilus assembly ATPase PilB
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
S_p1_S3_170907_scaffold_213107_12
unknown

Not on your lists

comp(11844..11972)
DNA (129bp) protein (43aa)

This feature has no annotations

S_p1_S3_170907_scaffold_213107_13
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(11976..13055)
DNA (1080bp) protein (360aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
S_p1_S3_170907_scaffold_213107_14
unknown

Not on your lists

13226..14143
DNA (918bp) protein (306aa)

This feature has no annotations

S_p1_S3_170907_scaffold_213107_15
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

14212..14673
DNA (462bp) protein (154aa)
Putative uncharacterized protein bin=GWC2_OD1_43_27 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
S_p1_S3_170907_scaffold_213107_16
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

14815..17175
DNA (2361bp) protein (787aa)
id=5227418 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
DNA polymerase I
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
S_p1_S3_170907_scaffold_213107_17
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

17175..18047
DNA (873bp) protein (291aa)
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
S_p1_S3_170907_scaffold_213107_18
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


comp(18030..18290)
DNA (261bp) protein (87aa)
30S ribosomal protein S20 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
30S ribosomal protein S20
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
S_p1_S3_170907_scaffold_213107_19
unknown

Not on your lists

comp(18339..18644)
DNA (306bp) protein (102aa)

This feature has no annotations

S_p1_S3_170907_scaffold_213107_20
R_RIF_OD1_09_51_11, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

18826..19152
DNA (327bp) protein (109aa)
Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_09_51_11_curated
S_p1_S3_170907_scaffold_213107_21
R_OD1_Giovannonibacteria_43_16, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(19434..21398)
DNA (1965bp) protein (655aa)
UvrABC system protein B Tax=Thermoanaerobacter italicus (strain DSM 9252 / Ab9) RepID=D3T463_THEIA
excinuclease ABC subunit B
Tax=RIFCSPHIGHO2_02_OD1_Giovannonibacteria_43_16_curated
S_p1_S3_170907_scaffold_213107_22
unknown

Not on your lists

21497..21811
DNA (315bp) protein (105aa)

This feature has no annotations

S_p1_S3_170907_scaffold_213107_23
GWF2_OD1_42_19, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

21919..22485
DNA (567bp) protein (189aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000313|EMBL:KKS47793.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWF2_42_19.;"
Holliday junction ATP-dependent DNA helicase RuvA bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
Holliday junction ATP-dependent DNA helicase ruvA
S_p1_S3_170907_scaffold_213107_24
RLO_OD1_41_13, Parcubacteria, Bacteria

Not on your lists

23048..23251
DNA (204bp) protein (68aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_41_13_curated
S_p1_S3_170907_scaffold_213107_25
unknown

Not on your lists

comp(23259..23366)
DNA (108bp) protein (36aa)

This feature has no annotations

S_p1_S3_170907_scaffold_213107_26
unknown

Not on your lists

comp(23521..24219)
DNA (699bp) protein (233aa)

This feature has no annotations

S_p1_S3_170907_scaffold_213107_27
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

24880..26190
DNA (1311bp) protein (437aa)
UDP-N-acetylmuramyl-tripeptide synthetase bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
UDP-N-acetylmuramyl tripeptide synthetase
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
S_p1_S3_170907_scaffold_213107_28
RBG_13_OP11_Beckwithbacteria_42_9_curated, Beckwithbacteria, Microgenomates, Bacteria

Not on your lists

26187..26684
DNA (498bp) protein (166aa)
Tax=RBG_13_OP11_Beckwithbacteria_42_9_curated
S_p1_S3_170907_scaffold_213107_29
GWA2_OD1_44_13b, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(26730..27437)
DNA (708bp) protein (236aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT42365.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_13b.;"
S_p1_S3_170907_scaffold_213107_30
GWB1_OP11_41_5, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

27548..28036
DNA (489bp) protein (163aa)
Glycerol-3-phosphate cytidylyltransferase {ECO:0000313|EMBL:KKS13263.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWB1_41_5.;"
Glycerol-3-phosphate cytidylyltransferase bin=GWC1_OD1_38_17 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
cytidyltransferase-related enzyme
Displaying 30 items

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