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S_p1_S3_coassembly_k141_1463465

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_1463465_1
R_RIF_OD1_12_48_26, RIF-OD1-12, Parcubacteria, Bacteria

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68..496
DNA (429bp) protein (143aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003622DAC
VKORC1/thioredoxin domain-containing protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_48_26_curated
S_p1_S3_coassembly_k141_1463465_2
S_OP1_64_32, KB1, Bacteria

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499..1389
DNA (891bp) protein (297aa)
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47)
Pyridoxal-phosphate (PLP) dependent enzymes family subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMY4_9BACT
Tax=S_OP1_64_32
S_p1_S3_coassembly_k141_1463465_3

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1398..1820
DNA (423bp) protein (141aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2EVU6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE14423.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
S_p1_S3_coassembly_k141_1463465_4
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

1817..2230
DNA (414bp) protein (138aa)
Uncharacterized protein Tax=Bacteria RepID=V5RRX0_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Giovannonibacteria_45_23_curated
S_p1_S3_coassembly_k141_1463465_5
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

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2212..2538
DNA (327bp) protein (109aa)
Putative uncharacterized protein bin=GWA1_ZB2_49_26 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Giovannonibacteria_45_23_curated
S_p1_S3_coassembly_k141_1463465_6
R_OD1_Uhrbacteria_48_12, Uhrbacteria, Parcubacteria, Bacteria

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2585..2842
DNA (258bp) protein (86aa)
transmembrane_regions bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
Tax=RIFCSPLOWO2_02_FULL_OD1_Uhrbacteria_48_12_curated
S_p1_S3_coassembly_k141_1463465_7
RLO_OD1_41_13, Parcubacteria, Bacteria

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2848..3609
DNA (762bp) protein (254aa)
Short-chain dehydrogenase/reductase SDR bin=GWA1_ZB2_49_26 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
3-oxoacyl-(acyl-carrier-protein) reductase
Tax=RIFCSPLOWO2_12_FULL_OD1_41_13_curated
S_p1_S3_coassembly_k141_1463465_8
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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3628..4524
DNA (897bp) protein (299aa)
Putative uncharacterized protein bin=GWC2_OD1_43_27 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
Tax=GWA1_OD1_43_15
S_p1_S3_coassembly_k141_1463465_9

Not on your lists

4521..6761
DNA (2241bp) protein (747aa)
actP; copper-transporting P-type ATPase (EC:3.6.3.4)
ATPase Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B7A92F
Copper-transporting P-type ATPase {ECO:0000313|EMBL:KKS91660.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_43_11.;"
S_p1_S3_coassembly_k141_1463465_10
RIFOXYD1_FULL_OD1_48_21_curated, Parcubacteria, Bacteria

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6780..8018
DNA (1239bp) protein (413aa)
putative NADH:ubiquinone reductase (H(+)-translocating) (EC:1.6.5.3)
Putative NADH:ubiquinone reductase (H(+)-translocating) Tax=Candidatus Saccharimonas aalborgensis RepID=R4PVP2_9BACT
Tax=RIFOXYD1_FULL_OD1_48_21_curated
S_p1_S3_coassembly_k141_1463465_11
R_RIF_OD1_06_34_10, RIF-OD1-6, Parcubacteria, Bacteria

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8060..8653
DNA (594bp) protein (198aa)
hypothetical protein; K08982 putative membrane protein bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_06_34_10_curated
S_p1_S3_coassembly_k141_1463465_12

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comp(8906..9256)
DNA (351bp) protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP31197.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_32_10.;"
hypothetical protein bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
S_p1_S3_coassembly_k141_1463465_13
Parcubacteria bacterium GW2011_GWF1_52_5, Parcubacteria, Bacteria

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9305..9898
DNA (594bp) protein (198aa)
Translation initiation factor IF-3 {ECO:0000313|EMBL:KKW27986.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF1_52_5.;"
translation initiation factor IF-3; K02520 translation initiation factor IF-3 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
translation initiation factor IF-3
S_p1_S3_coassembly_k141_1463465_14
R_OD1_Giovannonibacteria_46_13, Giovannonibacteria, Parcubacteria, Bacteria

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9915..10100
DNA (186bp) protein (62aa)
Ribosomal protein L35 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_46_13_curated
S_p1_S3_coassembly_k141_1463465_15

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10112..10459
DNA (348bp) protein (116aa)
50S ribosomal protein L20 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWM2_9BACT
50S ribosomal protein L20 {ECO:0000313|EMBL:KKW06904.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_49_16.;"
rplT; 50S ribosomal protein L20
S_p1_S3_coassembly_k141_1463465_16
R_RIF_OD1_09_51_11, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(10456..11022)
DNA (567bp) protein (189aa)
hypothetical protein; K06966 bin=OD1_GWC2_34_28 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_09_51_11_curated
S_p1_S3_coassembly_k141_1463465_17

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comp(11030..12394)
DNA (1365bp) protein (455aa)
RNA-metabolising metallo-beta-lactamase {ECO:0000313|EMBL:KKW33679.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_53_43.;"
id=5227327 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
putative exonuclease of the beta-lactamase fold involved in RNA processing
S_p1_S3_coassembly_k141_1463465_18
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(12675..13151)
DNA (477bp) protein (159aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] bin=ACD43 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=ACD43 organism_group=OD1 (Parcubacteria) organism_desc=OD1
putative nucleoside diphosphate kinase
Tax=RIFCSPHIGHO2_01_FULL_OD1_Giovannonibacteria_45_23_curated
S_p1_S3_coassembly_k141_1463465_19
RIFOXYD1_FULL_OD1_46_19_curated, Parcubacteria, Bacteria

Not on your lists

comp(13166..13960)
DNA (795bp) protein (265aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q1L6_9FIRM
Tax=RIFOXYD1_FULL_OD1_46_19_curated
S_p1_S3_coassembly_k141_1463465_20
R_RIF_OD1_09_43_27, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(13908..14543)
DNA (636bp) protein (212aa)
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
adenylate kinase (EC:2.7.4.3)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_09_43_27_curated
S_p1_S3_coassembly_k141_1463465_21
unknown

Not on your lists

comp(14540..14740)
DNA (201bp) protein (67aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1463465_22
R_RIF_OD1_12_48_26, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(14856..16694)
DNA (1839bp) protein (613aa)
Putative uncharacterized protein bin=GWC2_OD1_43_27 species=Staphylococcus epidermidis genus=Staphylococcus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
endonuclease/exonuclease/phosphatase
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_48_26_curated
S_p1_S3_coassembly_k141_1463465_23
GWA1_OD1_51_14_curated, Parcubacteria, Bacteria

Not on your lists


comp(17044..18318)
DNA (1275bp) protein (425aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
preprotein translocase subunit SecY
Tax=GWA1_OD1_51_14_curated
S_p1_S3_coassembly_k141_1463465_24
RIFOXYD1_FULL_OD1_44_32_curated, Parcubacteria, Bacteria

Not on your lists


comp(18527..19000)
DNA (474bp) protein (158aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
30S ribosomal protein S5
Tax=RIFOXYD1_FULL_OD1_44_32_curated
S_p1_S3_coassembly_k141_1463465_25
Weissella cibaria, Weissella, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(19003..19365)
DNA (363bp) protein (121aa)
50S ribosomal protein L18, partial Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037F56E2
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Leuconostocaceae; Weissella.;" source="Weissella cibaria.;"
hypothetical protein
S_p1_S3_coassembly_k141_1463465_26
Parcubacteria bacterium GW2011_GWA1_38_7, Parcubacteria, Bacteria

Not on your lists


comp(19374..19973)
DNA (600bp) protein (200aa)
50S ribosomal protein L6 {ECO:0000313|EMBL:KKQ77700.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_38_7.;"
50S ribosomal protein L6 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
50S ribosomal protein L6
S_p1_S3_coassembly_k141_1463465_27
R_OD1_Kaiserbacteria_55_17, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists


comp(19921..20313)
DNA (393bp) protein (131aa)
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rpsH; 30S ribosomal protein S8
Tax=RIFCSPHIGHO2_01_FULL_OD1_Kaiserbacteria_55_17_curated
S_p1_S3_coassembly_k141_1463465_28
RIFOXYC2_FULL_RIF_OD1_09_47_9_curated, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(20536..21147)
DNA (612bp) protein (204aa)
Peptidase S51 dipeptidase E bin=GWC2_OD1_43_27 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
S51 family peptidase
Tax=RIFOXYC2_FULL_RIF_OD1_09_47_9_curated
S_p1_S3_coassembly_k141_1463465_29
GWA2_OD1_51_10, Parcubacteria, Bacteria

Not on your lists

comp(21160..21525)
DNA (366bp) protein (122aa)
Uncharacterized protein Tax=Treponema medium ATCC 700293 RepID=S3KVI4_TREMD
PilT protein domain-containing protein {ECO:0000313|EMBL:KKW19823.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_51_10.;"
twitching motility protein PilT
S_p1_S3_coassembly_k141_1463465_30
RLO_OD1_Nomurabacteria_44_11, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


comp(21774..22130)
DNA (357bp) protein (119aa)
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
50S ribosomal protein L5
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_44_11_curated
Displaying 30 items

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