ggKbase home page

S5_GD2017_2_S2_scaffold_2938

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S5_GD2017_2_S2_scaffold_2938_1
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

comp(1..450)
DNA (450bp) protein (150aa)
ial:IALB_1797 maeB; Malic enzyme; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
malic enzyme (EC:1.1.1.40 2.3.1.8)
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
S5_GD2017_2_S2_scaffold_2938_2
RIFOXYC1_FULL_RIF_OD1_09_52_10_curated, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(740..1291)
DNA (552bp) protein (184aa)
Ribonuclease 3 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
Tax=RIFOXYC1_FULL_RIF_OD1_09_52_10_curated
S5_GD2017_2_S2_scaffold_2938_3
R_RIF_OD1_11_51_15, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(1351..2241)
DNA (891bp) protein (297aa)
Uncharacterized protein Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PYA3_9BACT
putative transcription termination factor
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_51_15_curated
S5_GD2017_2_S2_scaffold_2938_4
RIFOXYC1_FULL_RIF_OD1_09_52_10_curated, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(2723..3349)
DNA (627bp) protein (209aa)
Ribonuclease HII bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Ribonuclease HII
Tax=RIFOXYC1_FULL_RIF_OD1_09_52_10_curated
S5_GD2017_2_S2_scaffold_2938_5
unknown

Not on your lists

comp(3346..3579)
DNA (234bp) protein (78aa)

This feature has no annotations

S5_GD2017_2_S2_scaffold_2938_6
CG_Nomura_04, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

4232..4984
DNA (753bp) protein (251aa)
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
Uncharacterized protein Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXJ6_9BACT
Tax=CG_Nomura_04
S5_GD2017_2_S2_scaffold_2938_7
GWA2_OP11_44_7, Microgenomates, Bacteria

Not on your lists

4929..5954
DNA (1026bp) protein (342aa)
dnaE; DNA polymerase III DnaE (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] bin=bin9_gal15 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
DNA polymerase III subunit alpha (EC:2.7.7.7)
Polymerase III subunit alpha protein {ECO:0000313|EMBL:KKT75892.1}; species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWA2_44_7.;"
S5_GD2017_2_S2_scaffold_2938_8

Not on your lists

5893..6465
DNA (573bp) protein (191aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
Uncharacterized protein Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXJ6_9BACT
Polymerase III, alpha subunit protein {ECO:0000313|EMBL:KKR45433.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_40_13.;"
S5_GD2017_2_S2_scaffold_2938_9
R_OD1_Nomurabacteria_46_18, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

6548..7096
DNA (549bp) protein (183aa)
DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
dnaE; DNA polymerase III subunit alpha
Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_46_18_curated
S5_GD2017_2_S2_scaffold_2938_10
unknown

Not on your lists

7170..7526
DNA (357bp) protein (119aa)

This feature has no annotations

S5_GD2017_2_S2_scaffold_2938_11
R_RIF_OD1_09_44_41, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

7732..7965
DNA (234bp) protein (78aa)
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
preprotein translocase subunit SecG
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_09_44_41_curated
S5_GD2017_2_S2_scaffold_2938_12
R_OD1_Campbellbacteria_35_11, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists

8128..9837
DNA (1710bp) protein (570aa)
Extracellular solute-binding protein family 5 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
putative periplasmic oligopeptide-binding protein of oligopeptide ABC transporter
Tax=RIFCSPLOWO2_02_FULL_OD1_Campbellbacteria_35_11_curated
S5_GD2017_2_S2_scaffold_2938_13
R_RIF_OD1_11_45_35, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

9863..11836
DNA (1974bp) protein (658aa)
RNA-metabolising metallo-beta-lactamase bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RNA-metabolising metallo-beta-lactamase
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_45_35_curated
S5_GD2017_2_S2_scaffold_2938_14
RIFOXYD2_FULL_RIF_OD1_11_36_9_curated, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

11859..13028
DNA (1170bp) protein (390aa)
Major facilitator superfamily MFS_1 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
Tax=RIFOXYD2_FULL_RIF_OD1_11_36_9_curated
S5_GD2017_2_S2_scaffold_2938_15
RifOxyC12_full_RIF_OD1_09_46_25_curated, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(13033..13260)
DNA (228bp) protein (76aa)
coiled-coil 42..70 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
Tax=RifOxyC12_full_RIF_OD1_09_46_25_curated
S5_GD2017_2_S2_scaffold_2938_16
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(13262..14827)
DNA (1566bp) protein (522aa)
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
exodeoxyribonuclease VII large subunit
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
S5_GD2017_2_S2_scaffold_2938_17
R_OD1_Wolfebacteria_41_13b, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(14890..15456)
DNA (567bp) protein (189aa)
S-adenosyl-L-methionine-dependent methyltransferases bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RIFCSPLOWO2_02_FULL_OD1_Wolfebacteria_41_13b_curated
S5_GD2017_2_S2_scaffold_2938_18
RIFOXYD2_FULL_RIF_OD1_02_43_21_curated, RIF-OD1-2, Parcubacteria, Bacteria

Not on your lists

comp(15711..16889)
DNA (1179bp) protein (393aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2A252_9BACT
ATPase
Tax=RIFOXYD2_FULL_RIF_OD1_02_43_21_curated
S5_GD2017_2_S2_scaffold_2938_19
RBG_16_OP11_Levybacteria_35_6_curated, Levybacteria, Microgenomates, Bacteria

Not on your lists

comp(17154..17483)
DNA (330bp) protein (110aa)
fic; Fic family protein bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
Fic family protein
Tax=RBG_16_OP11_Levybacteria_35_6_curated
S5_GD2017_2_S2_scaffold_2938_20
R_RIF_OD1_10_43_60, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(17536..18249)
DNA (714bp) protein (238aa)
transmembrane_regions bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_10_43_60_curated
S5_GD2017_2_S2_scaffold_2938_21
R_OD1_Nomurabacteria_42_16, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(18319..19566)
DNA (1248bp) protein (416aa)
Glycosyltransferase involved in cell wall biogenesis Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVI5_9BACT
Glycosyltransferase involved in cell wall biogenesis
Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_42_16_curated
S5_GD2017_2_S2_scaffold_2938_22
R_RIF_OD1_09_50_20, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(19641..19895)
DNA (255bp) protein (85aa)
GIY-YIG catalytic domain protein Tax=Bacteriovorax sp. BAL6_X RepID=T0DM23_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_09_50_20_curated
S5_GD2017_2_S2_scaffold_2938_trna_1
unknown

Not on your lists

comp(19903..19975)
DNA (73bp)
transferRNA Gln
S5_GD2017_2_S2_scaffold_2938_23
unknown

Not on your lists

comp(20087..20533)
DNA (447bp) protein (149aa)

This feature has no annotations

Displaying 24 items

View Taxonomy