ggKbase home page

S_p65_S5_coassembly_k141_5031341

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p65_S5_coassembly_k141_5031341_1
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36..1514)
DNA (1479bp) protein (493aa)
Enoyl-CoA hydratase/isomerase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LQ56_HALO1
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ACY17093.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
S_p65_S5_coassembly_k141_5031341_2
unknown

Not on your lists

comp(1585..2034)
DNA (450bp) protein (150aa)

This feature has no annotations

S_p65_S5_coassembly_k141_5031341_3
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(2099..3811)
DNA (1713bp) protein (571aa)
seg bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
S_p65_S5_coassembly_k141_5031341_4
GWF2_OD1_41_16, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(3808..4143)
DNA (336bp) protein (112aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI000361A0F3
Uncharacterized protein {ECO:0000313|EMBL:KKR98489.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_41_16.;"
PadR family transcriptional regulator
S_p65_S5_coassembly_k141_5031341_5
R_OD1_Uhrbacteria_63_20, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(4204..4575)
DNA (372bp) protein (124aa)
Uncharacterized protein Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LWM4_ACIC1
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Uhrbacteria_63_20_curated
S_p65_S5_coassembly_k141_5031341_6
GWF2_OD1_41_16, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

4816..5145
DNA (330bp) protein (110aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR98355.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_41_16.;"
UPF0109 protein LDC_0451 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
hypothetical protein
S_p65_S5_coassembly_k141_5031341_7
RIFOXYB2_FULL_OD1_Uhrbacteria_57_15_curated, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

5331..6002
DNA (672bp) protein (224aa)
tRNA (guanine-N(1)-)-methyltransferase bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
tRNA (Guanine37-N1) -methyltransferase
Tax=RIFOXYB2_FULL_OD1_Uhrbacteria_57_15_curated
S_p65_S5_coassembly_k141_5031341_8
GWF2_OD1_41_16, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists


comp(6036..6392)
DNA (357bp) protein (119aa)
30S ribosomal protein S16 {ECO:0000313|EMBL:KKR98353.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_41_16.;"
Ribosomal protein S16 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
rpsP; ribosomal protein S16
S_p65_S5_coassembly_k141_5031341_9
RIFOXYB2_FULL_OD1_Uhrbacteria_57_15_curated, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

6576..7343
DNA (768bp) protein (256aa)
Tax=RIFOXYB2_FULL_OD1_Uhrbacteria_57_15_curated
S_p65_S5_coassembly_k141_5031341_10
GWC2_OD1_41_11, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(7416..9719)
DNA (2304bp) protein (768aa)
Chromosome partition protein Smc {ECO:0000313|EMBL:KKR87397.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWC2_41_11.;"
Chromosome partition protein Smc bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
smc; chromosome segregation protein SMC
S_p65_S5_coassembly_k141_5031341_11
GWF2_OD1_41_16, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

9860..10834
DNA (975bp) protein (325aa)
Phosphoesterase RecJ domain protein {ECO:0000313|EMBL:KKR98351.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_41_16.;"
Exopolyphosphatase-like enzyme bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
MgpA protein
S_p65_S5_coassembly_k141_5031341_12
Methanothermobacter sp. CaT2, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

10881..12488
DNA (1608bp) protein (536aa)
Uncharacterized protein Tax=Methanothermobacter thermautotrophicus CaT2 RepID=T2GH63_METTF
Uncharacterized protein {ECO:0000313|EMBL:BAM69319.1}; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter.;" source="Methanothermobacter sp. CaT2.;"
hypothetical protein
S_p65_S5_coassembly_k141_5031341_13
unknown

Not on your lists

12501..13205
DNA (705bp) protein (235aa)

This feature has no annotations

S_p65_S5_coassembly_k141_5031341_14
GWF2_OD1_41_16, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

13229..13843
DNA (615bp) protein (205aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000313|EMBL:KKR98350.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_41_16.;"
ATP-dependent Clp protease proteolytic subunit bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
Clp protease
S_p65_S5_coassembly_k141_5031341_15
GWA2_OD1_41_10, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

13993..15681
DNA (1689bp) protein (563aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR85016.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWA2_41_10.;"
transmembrane_regions 7..26 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
S_p65_S5_coassembly_k141_5031341_16
GWC2_OD1_41_11, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists


comp(15739..16290)
DNA (552bp) protein (184aa)
50S ribosomal protein L19 {ECO:0000313|EMBL:KKR87722.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWC2_41_11.;"
50S ribosomal protein L19 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
rplS; 50S ribosomal protein L19
S_p65_S5_coassembly_k141_5031341_17
unknown

Not on your lists

16537..17529
DNA (993bp) protein (331aa)

This feature has no annotations

S_p65_S5_coassembly_k141_5031341_18
unknown

Not on your lists

17615..21247
DNA (3633bp) protein (1211aa)

This feature has no annotations

S_p65_S5_coassembly_k141_5031341_19
GWC2_OD1_41_11, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

21266..22012
DNA (747bp) protein (249aa)
hflC; putative stomatin-like transmembrane protein (EC:3.4.-.-) bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
SPFH domain / Band 7 family protein {ECO:0000313|EMBL:KKR87726.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWC2_41_11.;"
SPFH protein
S_p65_S5_coassembly_k141_5031341_20
R_OD1_Uhrbacteria_47_17, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

22261..22866
DNA (606bp) protein (202aa)
riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase alpha chain Tax=Edwardsiella tarda RepID=D0Z7I7_EDWTE
Tax=RIFCSPLOWO2_01_FULL_OD1_Uhrbacteria_47_17_curated
S_p65_S5_coassembly_k141_5031341_21
GWA2_OD1_41_10, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists


22871..23920
DNA (1050bp) protein (350aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR85010.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWA2_41_10.;"
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
putative DNA-binding/iron metalloprotein/AP endonuclease
S_p65_S5_coassembly_k141_5031341_22
GWC2_OD1_41_11, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

23925..24362
DNA (438bp) protein (146aa)
ATP/GTP hydrolase {ECO:0000313|EMBL:KKR87728.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWC2_41_11.;"
Putative uncharacterized protein bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
Nucleotide-binding protein
S_p65_S5_coassembly_k141_5031341_23
GWA2_OD1_41_10, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(24373..26091)
DNA (1719bp) protein (573aa)
Type II secretion system protein E {ECO:0000313|EMBL:KKR85007.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWA2_41_10.;"
Type IV-A pilus assembly ATPase PilB bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
hypothetical protein
S_p65_S5_coassembly_k141_5031341_24
GWC2_OD1_41_11, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(26262..28115)
DNA (1854bp) protein (618aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH 1 {ECO:0000313|EMBL:KKR87732.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWC2_41_11.;"
ATP-dependent zinc metalloprotease FtsH bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
S_p65_S5_coassembly_k141_5031341_25
GWA2_OD1_41_10, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(28257..29426)
DNA (1170bp) protein (390aa)
RNA binding S1 domain protein {ECO:0000313|EMBL:KKR85004.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWA2_41_10.;"
RNA binding S1 domain protein bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
rpfA; 30S ribosomal protein S1
S_p65_S5_coassembly_k141_5031341_26
unknown

Not on your lists

29766..30131
DNA (366bp) protein (122aa)

This feature has no annotations

S_p65_S5_coassembly_k141_5031341_27
R_RIF_OD1_13_51_17, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(30482..31789)
DNA (1308bp) protein (436aa)
serS; seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_13_51_17_curated
S_p65_S5_coassembly_k141_5031341_28
GWF2_OD1_41_16, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

32607..34802
DNA (2196bp) protein (732aa)
Na-Ca exchanger/integrin-beta4 {ECO:0000313|EMBL:KKR98174.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_41_16.;"
Aspartic acid-rich protein aspolin2-1-like protein bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
hypothetical protein
Displaying 28 items

View Taxonomy