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ACD13_14

Alias: ACD13_26723.13524.22

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD13_14_1

Not on your lists

comp(1..474)
DNA (474bp) protein (158aa)
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8)
no description (db=Gene3D db_id=G3DSA:3.40.50.10490 from=14 to=149 evalue=3.2e-20)
SIS domain (db=superfamily db_id=SSF53697 from=53 to=142 evalue=5.7e-19)
SIS (db=HMMPfam db_id=PF01380 from=44 to=123 evalue=2.7e-09 interpro_id=IPR001347 interpro_description=Sugar isomerase (SIS) GO=Molecular Function: sugar binding (GO:0005529), Biological Process: carbohydrate metabolic process (GO:0005975))
ACD13_14_2

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comp(474..1853)
DNA (1380bp) protein (460aa)
Phosphomannomutase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0V7_THERP (db=UNIREF evalue=2.0e-114 bit_score=416.0 identity=44.77 coverage=96.5217391304348)
phosphomannomutase
phosphomannomutase
PHOSPHOHEXOMUTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR22573 from=253 to=445 evalue=1.6e-55)
ACD13_14_3

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comp(1850..2524)
DNA (675bp) protein (225aa)
DNA polymerase III clamp loader subunits, C-terminal domain (db=superfamily db_id=SSF48019 from=114 to=222 evalue=2.5e-06 interpro_id=IPR008921 interpro_description=DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA replication (GO:0006260))
Uncharacterized protein {ECO:0000313|EMBL:EKE13064.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_14_4

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comp(2525..2941)
DNA (417bp) protein (139aa)
metallopeptidase-like protein
Metallopeptidase-like protein {ECO:0000313|EMBL:EKE13065.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
metallopeptidase-like alias=ACD13_26723.13524.22_4,ACD13_26723.13524.22G0004,ACD13_C00014G00004 id=6501 tax=ACD13 species=Thermofilum pendens genus=Thermofilum taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota organism_group=OP11 organism_desc=OP11
ACD13_14_5

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comp(3006..3254)
DNA (249bp) protein (83aa)
Putative uncharacterized protein n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVD3_9BACT (db=UNIREF evalue=6.0e-12 bit_score=73.2 identity=44.16 coverage=90.3614457831325)
Uncharacterized protein {ECO:0000313|EMBL:EKE13066.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD13_14_6

Not on your lists

comp(3244..3759)
DNA (516bp) protein (172aa)
ruvC; crossover junction endodeoxyribonuclease ruvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Acidaminococcus sp. D21 RepID=C0WEE8_9FIRM (db=UNIREF evalue=7.0e-30 bit_score=132.0 identity=51.54 coverage=75.0)
seg (db=Seg db_id=seg from=143 to=159)
RuvC (db=HMMPfam db_id=PF02075 from=3 to=157 evalue=2.1e-41 interpro_id=IPR002176 interpro_description=Crossover junction endodeoxyribonuclease RuvC GO=Molecular Function: endodeoxyribonuclease activity (GO:0004520), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
ACD13_14_7

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comp(3831..4085)
DNA (255bp) protein (85aa)
seg (db=Seg db_id=seg from=73 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
Uncharacterized protein {ECO:0000313|EMBL:EKE13068.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_14_8

Not on your lists

comp(4156..4515)
DNA (360bp) protein (120aa)
hypothetical protein
UPF0102 protein PEPMIC_01108 n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLV5_9FIRM (db=UNIREF evalue=4.0e-21 bit_score=103.0 identity=52.94 coverage=84.1666666666667)
UPF0102 (db=HMMPfam db_id=PF02021 from=13 to=103 evalue=1.1e-25 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=11 to=113 evalue=3.0e-24 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like GO=Molecular Function: DNA binding (GO:0003677))
ACD13_14_9

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comp(4493..4861)
DNA (369bp) protein (123aa)
rplS; 50S ribosomal protein L19
seg (db=Seg db_id=seg from=106 to=119)
Ribosomal_L19 (db=HMMPfam db_id=PF01245 from=10 to=99 evalue=1.1e-22 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplS_bact: ribosomal protein L19 (db=HMMTigr db_id=TIGR01024 from=1 to=109 evalue=8.7e-19 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD13_14_10

Not on your lists

comp(4895..7021)
DNA (2127bp) protein (709aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
seg (db=Seg db_id=seg from=554 to=569)
seg (db=Seg db_id=seg from=503 to=514)
seg (db=Seg db_id=seg from=75 to=86)
ACD13_14_11

Not on your lists

comp(8412..9023)
DNA (612bp) protein (204aa)
diguanylate cyclase
GGDEF domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N773_9GAMM (db=UNIREF evalue=5.0e-19 bit_score=97.4 identity=35.4 coverage=73.0392156862745)
GGDEF (db=HMMPfam db_id=PF00990 from=53 to=200 evalue=1.0e-32 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
Nucleotide cyclase (db=superfamily db_id=SSF55073 from=56 to=203 evalue=1.5e-31 interpro_id=IPR001054 interpro_description=Adenylyl cyclase class-3/4/guanylyl cyclase GO=Biological Process: cyclic nucleotide biosynthetic process (GO:0009190), Molecular Function: phosphorus-oxygen lyase activity (GO:0016849), Biological Process: intracellular signaling pathway (GO:0023034))
ACD13_14_12

Not on your lists

comp(9016..10326)
DNA (1311bp) protein (437aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=GATB_THEYD (db=UNIREF evalue=2.0e-96 bit_score=356.0 identity=43.33 coverage=97.9405034324943)
gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-)
gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-)
seg (db=Seg db_id=seg from=379 to=395)
ACD13_14_13

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comp(10331..11575)
DNA (1245bp) protein (415aa)
major facilitator superfamily protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=226 to=248)
transmembrane_regions (db=TMHMM db_id=tmhmm from=258 to=280)
transmembrane_regions (db=TMHMM db_id=tmhmm from=293 to=315)
ACD13_14_14

Not on your lists

comp(11578..12978)
DNA (1401bp) protein (467aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
seg (db=Seg db_id=seg from=154 to=172)
AMIDASES (db=PatternScan db_id=PS00571 from=154 to=185 evalue=0.0 interpro_id=IPR020556 interpro_description=Amidase, conserved site)
ACD13_14_15

Not on your lists

comp(12975..13280)
DNA (306bp) protein (102aa)
glutamyl-tRNA(Gln) amidotransferase subunit C
Glu-tRNAGln amidotransferase C subunit (db=superfamily db_id=SSF141000 from=3 to=94 evalue=3.3e-25)
gatC: glutamyl-tRNA(Gln) and/or aspartyl-tRN (db=HMMTigr db_id=TIGR00135 from=4 to=96 evalue=3.2e-19 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
Glu-tRNAGln (db=HMMPfam db_id=PF02686 from=20 to=91 evalue=7.5e-17 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
ACD13_14_16

Not on your lists

comp(13325..13564)
DNA (240bp) protein (80aa)
HtpX-2 peptidase
Peptidase_M48 (db=HMMPfam db_id=PF01435 from=1 to=74 evalue=5.1e-05 interpro_id=IPR001915 interpro_description=Peptidase M48 GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508), Cellular Component: membrane (GO:0016020))
Uncharacterized protein {ECO:0000313|EMBL:EKE13061.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
HtpX-2 peptidase; K03799 heat shock protein HtpX [EC:3.4.24.-] alias=ACD13_26723.13524.22G0016,ACD13_26723.13524.22_16,ACD13_C00014G00016 id=6504 tax=ACD13 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=OP11 organism_desc=OP11
Displaying 16 items

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