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ACD13_17

Alias: ACD13_11407.49354.19

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD13_17_1

Not on your lists

comp(3..83)
DNA (81bp) protein (27aa)
3..83 - (rbs_motif=ATAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE13399.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_17_2
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

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121..1203
DNA (1083bp) protein (361aa)
recA; recA protein
recA; recA protein
Protein recA n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACX3_CARHZ (db=UNIREF evalue=4.0e-113 bit_score=411.0 identity=68.83 coverage=89.196675900277)
seg (db=Seg db_id=seg from=60 to=73)
ACD13_17_3
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

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1215..1826
DNA (612bp) protein (204aa)
hypothetical protein
RecX (db=HMMPfam db_id=PF02631 from=83 to=200 evalue=1.3e-22 interpro_id=IPR003783 interpro_description=Regulatory protein RecX GO=Biological Process: regulation of DNA repair (GO:0006282))
RecX (db=HAMAP db_id=MF_01114 from=41 to=203 evalue=13.934)
DNA repair regulator RecX; K03565 regulatory protein alias=ACD13_C00017G00003,ACD13_11407.49354.19G0003,ACD13_11407.49354.19_3 id=6611 tax=ACD13 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi organism_group=OP11 organism_desc=OP11
ACD13_17_4
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

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1933..3096
DNA (1164bp) protein (388aa)
hypothetical protein
Hdig/kh domain protein n=2 Tax=Dictyoglomus RepID=B5YDA5_DICT6 (db=UNIREF evalue=7.0e-80 bit_score=301.0 identity=50.53 coverage=97.1649484536082)
seg (db=Seg db_id=seg from=37 to=60)
ACD13_17_5
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

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3145..3420
DNA (276bp) protein (92aa)
transcriptional regulator HU subunit alpha
Bac_DNA_binding (db=HMMPfam db_id=PF00216 from=1 to=89 evalue=2.2e-25 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00411 from=1 to=90 evalue=8.9e-25 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
IHF-like DNA-binding proteins (db=superfamily db_id=SSF47729 from=1 to=90 evalue=1.0e-24 interpro_id=IPR010992 interpro_description=IHF-like DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
ACD13_17_6

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3458..4444
DNA (987bp) protein (329aa)
ABC transporter-like protein
seg (db=Seg db_id=seg from=282 to=299)
seg (db=Seg db_id=seg from=63 to=75)
seg (db=Seg db_id=seg from=309 to=318)
ACD13_17_7
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

Not on your lists

4441..5244
DNA (804bp) protein (268aa)
ABC-2 transporter family protein
Putative uncharacterized protein n=4 Tax=Bacillus RepID=C2VLC0_BACCE (db=UNIREF evalue=3.0e-27 bit_score=125.0 identity=33.72 coverage=94.4029850746269)
transmembrane_regions (db=TMHMM db_id=tmhmm from=207 to=226)
transmembrane_regions (db=TMHMM db_id=tmhmm from=175 to=197)
ACD13_17_8
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

Not on your lists

5249..6031
DNA (783bp) protein (261aa)
ABC transporter permease
transmembrane_regions (db=TMHMM db_id=tmhmm from=222 to=244)
transmembrane_regions (db=TMHMM db_id=tmhmm from=143 to=165)
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=128)
ACD13_17_9
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

Not on your lists

6034..7008
DNA (975bp) protein (325aa)
miaA; tRNA dimethylallyltransferase (EC:2.5.1.75)
seg (db=Seg db_id=seg from=269 to=282)
coiled-coil (db=Coil db_id=coil from=229 to=250 evalue=NA)
IPPT (db=HMMPfam db_id=PF01715 from=37 to=302 evalue=1.9e-48 interpro_id=IPR002627 interpro_description=tRNA isopentenyltransferase GO=Molecular Function: tRNA isopentenyltransferase activity (GO:0004811), Molecular Function: ATP binding (GO:0005524), Biological Process: tRNA processing (GO:0008033))
ACD13_17_10
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

Not on your lists

7001..7966
DNA (966bp) protein (322aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=190 to=212)
seg (db=Seg db_id=seg from=12 to=33)
transmembrane_regions (db=TMHMM db_id=tmhmm from=127 to=149)
ACD13_17_11
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

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8426..8893
DNA (468bp) protein (156aa)
RNP-1 like RNA-binding protein
RNP-1 like RNA-binding protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK57_9BACT (db=UNIREF evalue=2.0e-20 bit_score=101.0 identity=55.95 coverage=53.2051282051282)
seg (db=Seg db_id=seg from=109 to=145)
RNA-binding domain, RBD (db=superfamily db_id=SSF54928 from=23 to=134 evalue=9.7e-32)
ACD13_17_12
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

8890..9123
DNA (234bp) protein (78aa)
coiled-coil (db=Coil db_id=coil from=39 to=60 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:KKR62272.1}; TaxID=1618553 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA1_40_43.;"
ACD13_17_13
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

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9152..9826
DNA (675bp) protein (225aa)
Type II secretion system protein G n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MDR8_9PROT (db=UNIREF evalue=1.0e-08 bit_score=63.2 identity=31.96 coverage=40.0)
seg (db=Seg db_id=seg from=160 to=172)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=6 to=26 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
ACD13_17_14

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9882..10325
DNA (444bp) protein (148aa)
D-tyrosyl-tRNA(Tyr) deacylase
D-TYROSYL-TRNA(TYR) DEACYLASE (db=HMMPanther db_id=PTHR10472:SF4 from=1 to=147 evalue=8.8e-58)
D-TYROSYL-TRNA(TYR) DEACYLASE (db=HMMPanther db_id=PTHR10472 from=1 to=147 evalue=8.8e-58 interpro_id=IPR003732 interpro_description=D-tyrosyl-tRNA(Tyr) deacylase GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788), Biological Process: D-amino acid catabolic process (GO:0019478))
DTD-like (db=superfamily db_id=SSF69500 from=1 to=147 evalue=2.3e-50 interpro_id=IPR003732 interpro_description=D-tyrosyl-tRNA(Tyr) deacylase GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788), Biological Process: D-amino acid catabolic process (GO:0019478))
ACD13_17_15
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

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comp(10317..10916)
DNA (600bp) protein (200aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
ENDONUCLEASE_III_2 (db=PatternScan db_id=PS01155 from=99 to=128 evalue=0.0 interpro_id=IPR004036 interpro_description=Endonuclease III, conserved site-2 GO=Molecular Function: endonuclease activity (GO:0004519), Biological Process: DNA repair (GO:0006281))
A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III (db=HMMPanther db_id=PTHR10359 from=19 to=183 evalue=1.7e-61)
ENDONUCLEASE III (db=HMMPanther db_id=PTHR10359:SF2 from=19 to=183 evalue=1.7e-61)
ACD13_17_16
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

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comp(11143..11430)
DNA (288bp) protein (96aa)
seg (db=Seg db_id=seg from=68 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=72 to=94)
Uncharacterized protein {ECO:0000313|EMBL:KKR62277.1}; TaxID=1618553 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA1_40_43.;"
ACD13_17_17

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11502..11960
DNA (459bp) protein (153aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IK49_9CLOT (db=UNIREF evalue=6.0e-16 bit_score=86.3 identity=33.74 coverage=97.3856209150327)
seg (db=Seg db_id=seg from=67 to=78)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
ACD13_17_18
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

11989..13230
DNA (1242bp) protein (414aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
seg (db=Seg db_id=seg from=197 to=210)
DUF3048 (db=HMMPfam db_id=PF11258 from=76 to=170 evalue=1.9e-28 interpro_id=IPR021416 interpro_description=Protein of unknown function DUF3048)
ACD13_17_19

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13254..13838
DNA (585bp) protein (195aa)
Transcriptional regulator
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J9G3_9ARCH (db=UNIREF evalue=8.0e-23 bit_score=110.0 identity=38.62 coverage=95.3846153846154)
seg (db=Seg db_id=seg from=92 to=101)
seg (db=Seg db_id=seg from=160 to=171)
ACD13_17_20
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria

Not on your lists

13859..15187
DNA (1329bp) protein (443aa)
protein-export membrane protein SecD
transmembrane_regions (db=TMHMM db_id=tmhmm from=275 to=297)
transmembrane_regions (db=TMHMM db_id=tmhmm from=302 to=321)
transmembrane_regions (db=TMHMM db_id=tmhmm from=328 to=350)
ACD13_17_21
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria

Not on your lists

15184..15996
DNA (813bp) protein (271aa)
Protein translocase subunit SecF
transmembrane_regions (db=TMHMM db_id=tmhmm from=232 to=254)
transmembrane_regions (db=TMHMM db_id=tmhmm from=205 to=227)
transmembrane_regions (db=TMHMM db_id=tmhmm from=155 to=177)
ACD13_17_22

Not on your lists

comp(15989..17341)
DNA (1353bp) protein (451aa)
polyA polymerase
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJB7_ALKOO (db=UNIREF evalue=2.0e-84 bit_score=317.0 identity=40.0 coverage=92.6829268292683)
seg (db=Seg db_id=seg from=426 to=437)
ACD13_17_23
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

17360..19024
DNA (1665bp) protein (555aa)
single-stranded-DNA-specific exonuclease RecJ
single-stranded-DNA-specific exonuclease RecJ
Single-stranded-DNA-specific exonuclease RecJ n=2 Tax=Geobacillus RepID=C6QKN0_9BACI (db=UNIREF evalue=2.0e-83 bit_score=313.0 identity=37.0 coverage=96.7567567567568)
seg (db=Seg db_id=seg from=71 to=82)
ACD13_17_24

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comp(19034..19315)
DNA (282bp) protein (94aa)
19034..19315 - (rbs_motif=TAA rbs_spacer=6bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE13422.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_17_25
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists


19422..20564
DNA (1143bp) protein (381aa)
aspC; aspartyl-tRNA synthetase (EC:6.1.1.12)
seg (db=Seg db_id=seg from=347 to=361)
ASPARTYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR22594:SF6 from=80 to=342 evalue=4.7e-70)
ASPARTYL/LYSYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR22594 from=80 to=342 evalue=4.7e-70 interpro_id=IPR018150 interpro_description=Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:000
ACD13_17_26
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

Not on your lists

20561..20770
DNA (210bp) protein (70aa)
Suspect SCG annotation. See neighboring gene [ACD13_17_25].
Aspartyl-tRNA synthetase n=2 Tax=Clostridium butyricum RepID=B1QS37_CLOBU (db=UNIREF evalue=2.0e-15 bit_score=85.1 identity=58.73 coverage=88.5714285714286)
aspC1; aspartyl-tRNA synthetase
ASPARTYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR22594:SF6 from=1 to=62 evalue=7.7e-22)
ACD13_17_27
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

20829..21737
DNA (909bp) protein (303aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
seg (db=Seg db_id=seg from=7 to=18)
no description (db=Gene3D db_id=G3DSA:3.40.710.10 from=47 to=286 evalue=6.4e-66)
beta-lactamase/transpeptidase-like (db=superfamily db_id=SSF56601 from=1 to=286 evalue=2.2e-59 interpro_id=IPR012338 interpro_description=Beta-lactamase-type transpeptidase fold)
ACD13_17_28

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comp(21741..22799)
DNA (1059bp) protein (353aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
Uncharacterized protein {ECO:0000313|EMBL:EKE13362.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_17_29
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria

Not on your lists

22881..24227
DNA (1347bp) protein (449aa)
hypothetical protein
GLUTAMYL/GLUTAMINYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR10119 from=8 to=448 evalue=5.0e-132 interpro_id=IPR000924 interpro_description=Glutamyl/glutaminyl-tRNA synthetase, class Ic GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Molecular Function: ligase activity, forming aminoacyl-tRNA and related compounds (GO:0016876), Biological Process: tRNA aminoacylatio
GLUTAMYL-TRNA SYNTHETASE 1, 2, 3 (GLUTAMATE--TRNA LIGASE 1, 2, 3) (db=HMMPanther db_id=PTHR10119:SF1 from=8 to=448 evalue=5.0e-132)
gltX_bact: glutamyl-tRNA synthetase (db=HMMTigr db_id=TIGR00464 from=4 to=445 evalue=6.4e-120 interpro_id=IPR004527 interpro_description=Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: glutamate-tRNA ligase activity (GO:0004818), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: glutamyl-tRNA aminoacylation (GO:00064
ACD13_17_30
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

Not on your lists

24274..25251
DNA (978bp) protein (326aa)
seg (db=Seg db_id=seg from=65 to=81)
seg (db=Seg db_id=seg from=25 to=37)
Uncharacterized protein {ECO:0000313|EMBL:KKR53246.1}; TaxID=1618595 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWD2_40_19.;"
Displaying items 1-30 of 64 in total

View Taxonomy