Alias: ACD13_17358.38532.21
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD13_20_1
uncultured bacterium, Bacteria
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Not on your lists |
comp(269..919)
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peptidase M50
Peptidase M50 n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NUU1_9DELT (db=UNIREF evalue=6.0e-36 bit_score=154.0 identity=50.59 coverage=75.5760368663594)
transmembrane_regions (db=TMHMM db_id=tmhmm from=175 to=197)
transmembrane_regions (db=TMHMM db_id=tmhmm from=125 to=147)
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ACD13_20_2
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
971..1234
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L28p-like (db=superfamily db_id=SSF143800 from=1 to=72 evalue=1.3e-12)
Ribosomal_L28 (db=HMMPfam db_id=PF00830 from=5 to=71 evalue=1.5e-09 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
LSU ribosomal protein L28P {ECO:0000313|EMBL:KKR63149.1}; TaxID=1618553 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA1_40_43.;"
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ACD13_20_3
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(1201..2082)
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fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
GART (db=PatternScan db_id=PS00373 from=132 to=155 evalue=0.0 interpro_id=IPR001555 interpro_description=Phosphoribosylglycinamide formyltransferase, active site GO=Molecular Function: methyltransferase activity (GO:0008168))
Formyltransferase (db=superfamily db_id=SSF53328 from=1 to=206 evalue=1.4e-52 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
no description (db=Gene3D db_id=G3DSA:3.40.50.170 from=1 to=205 evalue=1.8e-48 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
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ACD13_20_4
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(2128..2661)
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peptide deformylase
seg (db=Seg db_id=seg from=83 to=94)
seg (db=Seg db_id=seg from=22 to=34)
Peptide deformylase (db=superfamily db_id=SSF56420 from=1 to=173 evalue=4.8e-49 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
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ACD13_20_5
uncultured bacterium, Bacteria
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Not on your lists |
comp(2709..4757)
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hypothetical protein
TPR repeat-containing protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0S1_DICTD (db=UNIREF evalue=3.0e-16 bit_score=91.3 identity=22.94 coverage=70.4245973645681)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=53)
transmembrane_regions (db=TMHMM db_id=tmhmm from=128 to=150)
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ACD13_20_6
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
4844..5911
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rod shape-determining protein MreB
rod shape-determining protein MreB
Rod shape-determining protein MreB n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DWU9_SULAA (db=UNIREF evalue=8.0e-88 bit_score=327.0 identity=54.86 coverage=95.5056179775281)
seg (db=Seg db_id=seg from=147 to=156)
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ACD13_20_7
uncultured bacterium, Bacteria
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Not on your lists |
comp(6299..6544)
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6299..6544 - (rbs_motif=ATAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE13260.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD13_20_8
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
7651..8559
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DNA protecting protein DprA
dprA: DNA protecting protein DprA (db=HMMTigr db_id=TIGR00732 from=68 to=287 evalue=2.6e-86 interpro_id=IPR003488 interpro_description=DNA recombination-mediator protein A GO=Biological Process: DNA mediated transformation (GO:0009294))
DNA_processg_A (db=HMMPfam db_id=PF02481 from=71 to=278 evalue=3.8e-74 interpro_id=IPR003488 interpro_description=DNA recombination-mediator protein A GO=Biological Process: DNA mediated transformation (GO:0009294))
MoCo carrier protein-like (db=superfamily db_id=SSF102405 from=79 to=287 evalue=1.3e-38)
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ACD13_20_9
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
8531..8725
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8531..8725 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:KKR57517.1}; TaxID=1618588 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWC2_40_30.;"
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ACD13_20_10
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
8745..10709
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DNA topoisomerase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CEQ0_THET1 (db=UNIREF evalue=6.0e-177 bit_score=624.0 identity=47.53 coverage=97.4045801526718)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase I (EC:5.99.1.2)
TOPOISOMERASE_I_PROK (db=PatternScan db_id=PS00396 from=279 to=293 evalue=0.0 interpro_id=IPR000380 interpro_description=DNA topoisomerase, type IA, core GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA topoisomerase type I activity (GO:0003917), Cellular Component: chromosome (GO:0005694), Biological Process: DNA topological change (GO:0006265))
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ACD13_20_11
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(10706..11254)
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CMP/dCMP deaminase zinc-binding protein
dCMP deaminase n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNP4_9SPIO (db=UNIREF evalue=2.0e-61 bit_score=238.0 identity=65.19 coverage=85.792349726776)
seg (db=Seg db_id=seg from=10 to=22)
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=101 to=136 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
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ACD13_20_12
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(11196..11747)
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hypothetical protein
seg (db=Seg db_id=seg from=3 to=16)
seg (db=Seg db_id=seg from=130 to=142)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=182 evalue=6.2e-17)
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ACD13_20_13
uncultured bacterium, Bacteria
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Not on your lists |
11766..12122
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pyrophosphatase
Predicted pyrophosphohydrolase, MazG-related, GP37 type (db=HMMPIR db_id=PIRSF006639 from=9 to=118 evalue=3.8e-47 interpro_id=IPR011379 interpro_description=NTP Pyrophosphohydrolase MazG-related, GP37)
all-alpha NTP pyrophosphatases (db=superfamily db_id=SSF101386 from=3 to=105 evalue=2.8e-20)
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ACD13_20_14
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(12124..12606)
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dihydrofolate reductase
Dihydrofolate reductase-like (db=superfamily db_id=SSF53597 from=1 to=160 evalue=3.2e-58)
DHFR_1 (db=HMMPfam db_id=PF00186 from=2 to=158 evalue=3.0e-53 interpro_id=IPR001796 interpro_description=Dihydrofolate reductase domain GO=Molecular Function: dihydrofolate reductase activity (GO:0004146), Biological Process: glycine biosynthetic process (GO:0006545), Biological Process: nucleotide biosynthetic process (GO:0009165))
no description (db=Gene3D db_id=G3DSA:3.40.430.10 from=1 to=147 evalue=1.0e-45)
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ACD13_20_15
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(12615..13559)
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thymidylate synthase
thymidylate synthase
Thymidylate synthase n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YUR4_9GAMM (db=UNIREF evalue=2.0e-86 bit_score=322.0 identity=49.51 coverage=94.9206349206349)
THYMIDYLATE_SYNTHASE (db=PatternScan db_id=PS00091 from=176 to=204 evalue=0.0 interpro_id=IPR020940 interpro_description=Thymidylate synthase, active site GO=Molecular Function: thymidylate synthase activity (GO:0004799), Biological Process: dTMP biosynthetic process (GO:0006231))
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ACD13_20_16
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
13617..14384
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deoxyadenosine kinase (EC:2.7.1.76)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=8 to=201 evalue=3.8e-31)
DEOXYGUANOSINE KINASE/DEOXYADENOSINE KINASE (db=HMMPanther db_id=PTHR10513:SF4 from=20 to=176 evalue=1.8e-28)
DEOXYNUCLEOSIDE KINASE FAMILY PROTEIN (db=HMMPanther db_id=PTHR10513 from=20 to=176 evalue=1.8e-28 interpro_id=IPR002624 interpro_description=Deoxynucleoside kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (GO:0006139), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
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ACD13_20_17
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
14381..15034
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dTMP kinase (EC:2.7.4.9)
THYMIDYLATE_KINASE (db=PatternScan db_id=PS01331 from=96 to=108 evalue=0.0 interpro_id=IPR018095 interpro_description=Thymidylate kinase, conserved site GO=Molecular Function: thymidylate kinase activity (GO:0004798), Molecular Function: ATP binding (GO:0005524), Biological Process: dTDP biosynthetic process (GO:0006233))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=3 to=215 evalue=5.1e-44)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=214 evalue=3.0e-43)
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ACD13_20_18
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
15044..16345
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Serine hydroxymethyltransferase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIJ0_9EURY (db=UNIREF evalue=8.0e-126 bit_score=454.0 identity=53.49 coverage=98.6175115207373)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
seg (db=Seg db_id=seg from=210 to=220)
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ACD13_20_19
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
16401..17195
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bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein folD n=1 Tax=Lactobacillus ultunensis DSM 16047 RepID=C2EMC4_9LACO (db=UNIREF evalue=5.0e-46 bit_score=187.0 identity=42.96 coverage=98.1132075471698)
seg (db=Seg db_id=seg from=183 to=197)
METHYLENETETRAHYDROFOLATE DEHYDROGENASE FAMILY MEMBER (db=HMMPanther db_id=PTHR10025 from=26 to=263 evalue=1.2e-66)
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ACD13_20_20
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
17303..18001
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rpsB; 30S ribosomal protein S2
seg (db=Seg db_id=seg from=170 to=181)
RIBOSOMAL_S2_1 (db=PatternScan db_id=PS00962 from=8 to=19 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL_S2_2 (db=PatternScan db_id=PS00963 from=160 to=184 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD13_20_21
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
18004..18456
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translation elongation factor EFTs/EF1B dimerization
ELONGATION FACTOR TS (db=HMMPanther db_id=PTHR11741 from=7 to=147 evalue=9.4e-29 interpro_id=IPR001816 interpro_description=Translation elongation factor EFTs/EF1B GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
Elongation factor Ts (EF-Ts), dimerisation domain (db=superfamily db_id=SSF54713 from=54 to=150 evalue=9.6e-27 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
no description (db=Gene3D db_id=G3DSA:3.30.479.20 from=57 to=149 evalue=1.4e-22 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
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ACD13_20_22
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
18498..19025
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ribosome recycling factor
seg (db=Seg db_id=seg from=61 to=72)
RIBOSOME RECYCLING FACTOR (db=HMMPanther db_id=PTHR20982 from=1 to=175 evalue=9.4e-55 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
RRF (db=HMMPfam db_id=PF01765 from=9 to=173 evalue=2.9e-48 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
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ACD13_20_23
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
19090..20202
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membrane-associated zinc metalloprotease
transmembrane_regions (db=TMHMM db_id=tmhmm from=330 to=352)
seg (db=Seg db_id=seg from=338 to=345)
seg (db=Seg db_id=seg from=2 to=18)
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ACD13_20_24
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
20216..21445
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Prolyl-tRNA synthetase
Proline--tRNA ligase n=1 Tax=Turicibacter sp. PC909 RepID=D4W313_9FIRM (db=UNIREF evalue=4.0e-85 bit_score=318.0 identity=40.85 coverage=95.3658536585366)
seg (db=Seg db_id=seg from=237 to=257)
TRNA SYNTHETASE-RELATED (db=HMMPanther db_id=PTHR11451 from=38 to=409 evalue=6.1e-132)
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ACD13_20_25
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
21446..21766
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Hit family protein
Histidine triad protein n=1 Tax=beta proteobacterium KB13 RepID=B6BVA0_9PROT (db=UNIREF evalue=4.0e-15 bit_score=84.0 identity=41.94 coverage=81.3084112149533)
seg (db=Seg db_id=seg from=90 to=97)
HISTIDINE TRIAD (HIT) PROTEIN (db=HMMPanther db_id=PTHR23089 from=19 to=105 evalue=4.2e-13 interpro_id=IPR001310 interpro_description=Histidine triad (HIT) protein)
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ACD13_20_26
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
21763..22200
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GatB/YqeY domain-containing protein
seg (db=Seg db_id=seg from=20 to=30)
YqeY (db=HMMPfam db_id=PF09424 from=4 to=144 evalue=3.8e-41 interpro_id=IPR019004 interpro_description=Protein of unknown function YOR215C, mitochondrial)
GatB/YqeY motif (db=superfamily db_id=SSF89095 from=1 to=145 evalue=9.5e-32 interpro_id=IPR003789 interpro_description=Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO=Biological Process: translation (GO:0006412), Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884))
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ACD13_20_27
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
22219..22608
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rRNA maturation factor
UPF0054 (db=HMMPfam db_id=PF02130 from=17 to=128 evalue=2.8e-19 interpro_id=IPR002036 interpro_description=Uncharacterised protein family UPF0054 GO=Molecular Function: metallopeptidase activity (GO:0008237), Molecular Function: zinc ion binding (GO:0008270))
Metalloproteases ("zincins"), catalytic domain (db=superfamily db_id=SSF55486 from=2 to=129 evalue=8.9e-19)
no description (db=Gene3D db_id=G3DSA:3.40.390.30 from=5 to=127 evalue=7.0e-15)
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ACD13_20_28
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria
|
Not on your lists |
22605..24107
|
hypothetical protein
coiled-coil (db=Coil db_id=coil from=350 to=371 evalue=NA)
seg (db=Seg db_id=seg from=341 to=356)
seg (db=Seg db_id=seg from=279 to=291)
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ACD13_20_29
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
24166..24441
|
seg (db=Seg db_id=seg from=80 to=90)
coiled-coil (db=Coil db_id=coil from=47 to=75 evalue=NA)
coiled-coil (db=Coil db_id=coil from=1 to=32 evalue=NA)
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ACD13_20_30
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria
|
Not on your lists |
24459..25067
|
recR; recombination protein RecR
recR: recombination protein RecR (db=HMMTigr db_id=TIGR00615 from=1 to=200 evalue=1.4e-91 interpro_id=IPR000093 interpro_description=RecR protein GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
Recombination protein RecR (db=superfamily db_id=SSF111304 from=1 to=202 evalue=1.5e-72 interpro_id=IPR000093 interpro_description=RecR protein GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
RecR (db=HMMPfam db_id=PF02132 from=39 to=78 evalue=5.3e-13 interpro_id=IPR015967 interpro_description=Zinc finger C4-type, RecR GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
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