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ACD13_23

Alias: ACD13_42027.39393.22

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Displaying items 31-43 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD13_23_31

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comp(29605..30393)
DNA (789bp) protein (263aa)
ftsE; Cell division ATP-binding protein
seg (db=Seg db_id=seg from=217 to=247)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=144 to=158 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
SIGMA54_INTERACT_1 (db=PatternScan db_id=PS00675 from=37 to=50 evalue=0.0 interpro_id=IPR002078 interpro_description=RNA polymerase sigma factor 54, interaction GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: transcription factor binding (GO:0008134))
ACD13_23_32

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comp(30458..30862)
DNA (405bp) protein (135aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:EKE12493.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_23_33

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comp(30890..31939)
DNA (1050bp) protein (350aa)
hypothetical protein
seg (db=Seg db_id=seg from=82 to=95)
coiled-coil (db=Coil db_id=coil from=47 to=97 evalue=NA)
RF_PROK_I (db=PatternScan db_id=PS00745 from=227 to=243 evalue=0.0 interpro_id=IPR000352 interpro_description=Class I peptide chain release factor GO=Molecular Function: translation release factor activity (GO:0003747), Biological Process: translational termination (GO:0006415))
ACD13_23_34

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comp(31987..32448)
DNA (462bp) protein (154aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=43)
seg (db=Seg db_id=seg from=56 to=69)
seg (db=Seg db_id=seg from=28 to=43)
ACD13_23_35

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comp(32492..33115)
DNA (624bp) protein (208aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=56)
seg (db=Seg db_id=seg from=195 to=207)
seg (db=Seg db_id=seg from=143 to=164)
seg (db=Seg db_id=seg from=79 to=98)
ACD13_23_36

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comp(33146..34252)
DNA (1107bp) protein (369aa)
tRNA-guanine transglycosylase, various specificities (EC:2.4.2.29)
no description (db=Gene3D db_id=G3DSA:3.20.20.105 from=2 to=363 evalue=3.3e-81 interpro_id=IPR002616 interpro_description=Queuine/other tRNA-ribosyltransferase GO=Biological Process: tRNA modification (GO:0006400), Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479), Biological Process: queuosine biosynthetic process (GO:0008616))
tRNA-guanine transglycosylase (db=superfamily db_id=SSF51713 from=13 to=363 evalue=7.3e-80 interpro_id=IPR002616 interpro_description=Queuine/other tRNA-ribosyltransferase GO=Biological Process: tRNA modification (GO:0006400), Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479), Biological Process: queuosine biosynthetic process (GO:0008616))
tgt_general: tRNA-guanine transglycosylas (db=HMMTigr db_id=TIGR00449 from=2 to=368 evalue=8.8e-72 interpro_id=IPR002616 interpro_description=Queuine/other tRNA-ribosyltransferase GO=Biological Process: tRNA modification (GO:0006400), Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479), Biological Process: queuosine biosynthetic process (GO:0008616))
ACD13_23_37

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comp(34281..34832)
DNA (552bp) protein (184aa)
hypothetical protein
SNARE associated Golgi protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4D4_HERA2 (db=UNIREF evalue=1.0e-16 bit_score=89.4 identity=39.85 coverage=70.6521739130435)
transmembrane_regions (db=TMHMM db_id=tmhmm from=153 to=175)
transmembrane_regions (db=TMHMM db_id=tmhmm from=121 to=143)
ACD13_23_38

Not on your lists

comp(34832..35377)
DNA (546bp) protein (182aa)
FKBP-type peptidylprolyl isomerase (EC:5.2.1.8)
seg (db=Seg db_id=seg from=15 to=26)
seg (db=Seg db_id=seg from=159 to=169)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
ACD13_23_39

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comp(35408..35989)
DNA (582bp) protein (194aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=53 to=75)
coiled-coil (db=Coil db_id=coil from=134 to=162 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE12500.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_23_40

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comp(35986..36519)
DNA (534bp) protein (178aa)
RNA polymerase ECF-type sigma factor
SIGMA70_ECF (db=PatternScan db_id=PS01063 from=45 to=77 evalue=0.0 interpro_id=IPR000838 interpro_description=RNA polymerase sigma factor 70, ECF, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=18 to=175 evalue=3.9e-43 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=12 to=87 evalue=4.7e-21 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD13_23_41

Not on your lists

36599..37045
DNA (447bp) protein (149aa)
seg (db=Seg db_id=seg from=68 to=119)
Uncharacterized protein {ECO:0000313|EMBL:EKE12502.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Rhs element Vgr family protein
ACD13_23_42

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comp(37053..38000)
DNA (948bp) protein (316aa)
protein translocase subunit secA
Preprotein translocase subunit SecA n=1 Tax=uncultured bacterium Rlip2 RepID=C0K076_9BACT (db=UNIREF evalue=1.0e-48 bit_score=197.0 identity=42.15 coverage=75.6329113924051)
seg (db=Seg db_id=seg from=260 to=283)
seg (db=Seg db_id=seg from=83 to=93)
ACD13_23_43
ACD13, ACD13, ACD13, ACD13, Microgenomates, Bacteria

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39368..39433
DNA (66bp) protein (22aa)
39368..39433 + (rbs_motif=TAA rbs_spacer=3bp)
Displaying items 31-43 of 43 in total

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