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ACD13_23

Alias: ACD13_42027.39393.22

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD13_23_1

Not on your lists

comp(3..1352)
DNA (1350bp) protein (450aa)
undecaprenyl-diphospho-oligosaccharide flippase
transmembrane_regions (db=TMHMM db_id=tmhmm from=248 to=267)
transmembrane_regions (db=TMHMM db_id=tmhmm from=307 to=329)
transmembrane_regions (db=TMHMM db_id=tmhmm from=339 to=358)
ACD13_23_2

Not on your lists

comp(1498..3027)
DNA (1530bp) protein (510aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=336 to=358)
transmembrane_regions (db=TMHMM db_id=tmhmm from=307 to=329)
transmembrane_regions (db=TMHMM db_id=tmhmm from=286 to=303)
transmembrane_regions (db=TMHMM db_id=tmhmm from=258 to=279)
ACD13_23_3

Not on your lists

comp(3057..3884)
DNA (828bp) protein (276aa)
putative glycosyltransferase
seg (db=Seg db_id=seg from=10 to=21)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=232 evalue=2.8e-47)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=7 to=233 evalue=2.3e-31)
ACD13_23_4

Not on your lists

comp(3881..4777)
DNA (897bp) protein (299aa)
glycosyl transferase family protein
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=269 evalue=4.7e-45)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=6 to=216 evalue=9.0e-29)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=7 to=166 evalue=1.8e-27 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD13_23_5

Not on your lists

comp(4781..5815)
DNA (1035bp) protein (345aa)
hypothetical protein
Putative Glycosyl transferase n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MJ20_9BACT (db=UNIREF evalue=2.0e-39 bit_score=166.0 identity=33.57 coverage=77.6811594202899)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=1 to=341 evalue=8.9e-38)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=341 evalue=5.2e-27)
ACD13_23_6

Not on your lists

comp(5904..6653)
DNA (750bp) protein (250aa)
family 2 glycosyl transferase
seg (db=Seg db_id=seg from=37 to=48)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=131 evalue=9.0e-06)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=36 to=101 evalue=6.7e-05 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD13_23_7

Not on your lists

comp(6650..7597)
DNA (948bp) protein (316aa)
glycosyl transferase family protein (EC:2.4.1.-)
seg (db=Seg db_id=seg from=241 to=249)
seg (db=Seg db_id=seg from=94 to=103)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=270 evalue=2.4e-46)
ACD13_23_8

Not on your lists

comp(7599..8498)
DNA (900bp) protein (300aa)
Glycosyl transferase family 2 n=1 Tax=bacterium Ellin514 RepID=B9XPM0_9BACT (db=UNIREF evalue=6.0e-51 bit_score=204.0 identity=39.68 coverage=83.0)
UDP-glucose--lipopolysaccharide core heptose I 4-beta-glucosyltransferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=142 evalue=1.7e-26)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=6 to=126 evalue=3.2e-19 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD13_23_9

Not on your lists

comp(8540..9289)
DNA (750bp) protein (250aa)
glycosyl transferase family protein
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=247 evalue=6.1e-40)
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=11 to=240 evalue=1.5e-31)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=6 to=170 evalue=2.2e-26 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD13_23_10

Not on your lists

comp(9286..10773)
DNA (1488bp) protein (496aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=176 to=198)
transmembrane_regions (db=TMHMM db_id=tmhmm from=210 to=227)
transmembrane_regions (db=TMHMM db_id=tmhmm from=273 to=292)
transmembrane_regions (db=TMHMM db_id=tmhmm from=304 to=321)
ACD13_23_11

Not on your lists

comp(10757..11740)
DNA (984bp) protein (328aa)
DHH subfamily 1 protein
DHH phosphoesterases (db=superfamily db_id=SSF64182 from=16 to=317 evalue=1.6e-61)
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR13734 from=1 to=312 evalue=3.3e-48)
POLYA POLYMERASE (db=HMMPanther db_id=PTHR13734:SF4 from=1 to=312 evalue=3.3e-48)
ACD13_23_12

Not on your lists

comp(11747..13282)
DNA (1536bp) protein (512aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=226 to=243)
transmembrane_regions (db=TMHMM db_id=tmhmm from=294 to=313)
transmembrane_regions (db=TMHMM db_id=tmhmm from=323 to=340)
transmembrane_regions (db=TMHMM db_id=tmhmm from=349 to=368)
ACD13_23_13

Not on your lists

comp(13279..13989)
DNA (711bp) protein (237aa)
WcaA; glycosyltransferases
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=14 to=212 evalue=4.3e-42)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=7 to=235 evalue=8.1e-41)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=9 to=171 evalue=1.9e-33 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD13_23_14

Not on your lists

14134..15270
DNA (1137bp) protein (379aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=347 to=369)
transmembrane_regions (db=TMHMM db_id=tmhmm from=321 to=340)
transmembrane_regions (db=TMHMM db_id=tmhmm from=300 to=317)
ACD13_23_15

Not on your lists

15337..15690
DNA (354bp) protein (118aa)
DUF35_N (db=HMMPfam db_id=PF12172 from=11 to=41 evalue=2.2e-09 interpro_id=IPR022002 interpro_description=Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal)
Uncharacterized protein {ECO:0000313|EMBL:EKE12519.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD13_23_16

Not on your lists

comp(15687..16862)
DNA (1176bp) protein (392aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=247 to=265)
transmembrane_regions (db=TMHMM db_id=tmhmm from=317 to=339)
transmembrane_regions (db=TMHMM db_id=tmhmm from=349 to=371)
ACD13_23_17

Not on your lists

17013..17654
DNA (642bp) protein (214aa)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Turicibacter sp. PC909 RepID=D4W339_9FIRM (db=UNIREF evalue=8.0e-59 bit_score=229.0 identity=54.46 coverage=97.6635514018692)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA-(m1G37) methyltransferase (db=HMMPIR db_id=PIRSF000386 from=1 to=211 evalue=7.2e-101 interpro_id=IPR002649 interpro_description=tRNA (guanine-N1-)-methyltransferase, bacteria GO=Molecular Function: RNA binding (GO:0003723), Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA (guanine-N1-)-methyltransferase activity (GO:0009019))
trmD: tRNA (guanine-N1)-methyltransferase (db=HMMTigr db_id=TIGR00088 from=2 to=211 evalue=3.2e-95 interpro_id=IPR002649 interpro_description=tRNA (guanine-N1-)-methyltransferase, bacteria GO=Molecular Function: RNA binding (GO:0003723), Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA (guanine-N1-)-methyltransferase activity (GO:0009019))
ACD13_23_18

Not on your lists

comp(17643..18542)
DNA (900bp) protein (300aa)
hypothetical protein
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=298 evalue=8.5e-52)
RmlD_sub_bind (db=HMMPfam db_id=PF04321 from=3 to=297 evalue=1.3e-50 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=3 to=223 evalue=4.3e-33 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: binding (GO:0005488), Biological Process: metabolic process (GO:0008152))
ACD13_23_19

Not on your lists

comp(18542..19111)
DNA (570bp) protein (190aa)
dTDP-4-dehydrorhamnose 3,5-epimerase
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M1U6_BACS4 (db=UNIREF evalue=6.0e-28 bit_score=126.0 identity=38.12 coverage=91.5789473684211)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=6 to=183 evalue=3.7e-49 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=6 to=183 evalue=2.7e-43 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
ACD13_23_20

Not on your lists

comp(19118..20029)
DNA (912bp) protein (304aa)
DUF218 (db=HMMPfam db_id=PF02698 from=64 to=201 evalue=1.0e-11 interpro_id=IPR003848 interpro_description=Protein of unknown function DUF218)
Uncharacterized protein {ECO:0000313|EMBL:EKE12524.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_23_21

Not on your lists

comp(20029..21912)
DNA (1884bp) protein (628aa)
dTDP-glucose 4,6-dehydratase
seg (db=Seg db_id=seg from=481 to=492)
DTDP-GLUCOSE 4,6-DEHYDRATASE (db=HMMPanther db_id=PTHR10366:SF41 from=5 to=325 evalue=8.7e-142)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=5 to=325 evalue=8.7e-142)
ACD13_23_22

Not on your lists

comp(21915..22811)
DNA (897bp) protein (299aa)
UTP--glucose-1-phosphate uridylyltransferase
UDP-glucose pyrophosphorylase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8URY9_9AQUI (db=UNIREF evalue=6.0e-65 bit_score=251.0 identity=46.62 coverage=95.9866220735786)
seg (db=Seg db_id=seg from=86 to=97)
GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE (db=HMMPanther db_id=PTHR22572:SF14 from=15 to=293 evalue=1.9e-81)
ACD13_23_23

Not on your lists

comp(22824..23084)
DNA (261bp) protein (87aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=84)
Uncharacterized protein {ECO:0000313|EMBL:EKE12527.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_23_24

Not on your lists

comp(23117..24070)
DNA (954bp) protein (318aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=47)
transmembrane_regions (db=TMHMM db_id=tmhmm from=294 to=316)
transmembrane_regions (db=TMHMM db_id=tmhmm from=263 to=282)
ACD13_23_25

Not on your lists

comp(24128..25114)
DNA (987bp) protein (329aa)
UDP-glucose-4-epimerase
UDP-glucose-4-epimerase
UDP-glucose 4-epimerase n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RMJ1_ACIFV (db=UNIREF evalue=4.0e-80 bit_score=301.0 identity=48.33 coverage=97.8723404255319)
seg (db=Seg db_id=seg from=243 to=259)
ACD13_23_26

Not on your lists

comp(25119..25541)
DNA (423bp) protein (141aa)
VanZ family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=123)
transmembrane_regions (db=TMHMM db_id=tmhmm from=72 to=91)
seg (db=Seg db_id=seg from=106 to=116)
ACD13_23_27

Not on your lists

comp(25513..26631)
DNA (1119bp) protein (373aa)
hypothetical protein (db=KEGG evalue=2.0e-08 bit_score=63.9 identity=33.86 coverage=32.4396782841823)
seg (db=Seg db_id=seg from=303 to=320)
transmembrane_regions (db=TMHMM db_id=tmhmm from=340 to=362)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
ACD13_23_28

Not on your lists

comp(26641..26985)
DNA (345bp) protein (115aa)
Trp_repressor (db=HMMPfam db_id=PF01371 from=2 to=53 evalue=3.8e-07 interpro_id=IPR000831 interpro_description=Trp repressor GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Uncharacterized protein {ECO:0000313|EMBL:EKE12532.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_23_29

Not on your lists

comp(27453..28643)
DNA (1191bp) protein (397aa)
seg (db=Seg db_id=seg from=205 to=219)
seg (db=Seg db_id=seg from=172 to=190)
coiled-coil (db=Coil db_id=coil from=141 to=183 evalue=NA)
coiled-coil (db=Coil db_id=coil from=42 to=70 evalue=NA)
ACD13_23_30

Not on your lists

28914..29099
DNA (186bp) protein (62aa)
28914..29099 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE12491.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 43 in total

View Taxonomy