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ACD13_26

Alias: ACD13_269.19391.18

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD13_26_1
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(2..130)
DNA (129bp) protein (43aa)
2..130 - (rbs_motif=TAA rbs_spacer=8bp)
Uncharacterized protein {ECO:0000313|EMBL:KKR57082.1}; TaxID=1618588 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWC2_40_30.;"
ACD13_26_2
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria

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236..931
DNA (696bp) protein (232aa)
hypothetical protein
TPR repeat-containing protein n=1 Tax=Dehalogenimonas lykanthroporepellens BL-DC-9 RepID=D4Y0Z0_9CHLR (db=UNIREF evalue=3.0e-26 bit_score=121.0 identity=35.68 coverage=84.051724137931)
TPR-like (db=superfamily db_id=SSF48452 from=7 to=85 evalue=3.3e-11)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=7 to=84 evalue=5.8e-09 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
ACD13_26_3
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(933..1859)
DNA (927bp) protein (309aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
Uncharacterized protein {ECO:0000313|EMBL:KKR63527.1}; TaxID=1618553 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA1_40_43.;"
ACD13_26_4

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comp(1872..3557)
DNA (1686bp) protein (562aa)
sodium/hydrogen exchanger
transmembrane_regions (db=TMHMM db_id=tmhmm from=169 to=191)
transmembrane_regions (db=TMHMM db_id=tmhmm from=212 to=234)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=47)
ACD13_26_5
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria

Not on your lists

3624..4574
DNA (951bp) protein (317aa)
CaCA family Na+/Ca+ antiporter
Na+/Ca+ antiporter, CaCA family n=1 Tax=Rhodopseudomonas palustris DX-1 RepID=D2M6I0_RHOPA (db=UNIREF evalue=1.0e-25 bit_score=120.0 identity=30.9 coverage=86.4353312302839)
seg (db=Seg db_id=seg from=5 to=16)
seg (db=Seg db_id=seg from=175 to=188)
ACD13_26_6
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(4581..5282)
DNA (702bp) protein (234aa)
rluD1; protein RluD1 (EC:5.4.99.-)
PSI_RLU (db=PatternScan db_id=PS01129 from=57 to=71 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=3 to=232 evalue=7.3e-57 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
RIBOSOMAL PSEUDOURIDINE SYNTHASE (db=HMMPanther db_id=PTHR10436 from=5 to=224 evalue=1.5e-53)
ACD13_26_7
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

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comp(5310..5714)
DNA (405bp) protein (135aa)
DnaK suppressor protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RRT7_9RHOB (db=UNIREF evalue=5.0e-08 bit_score=60.1 identity=37.04 coverage=74.8148148148148)
coiled-coil (db=Coil db_id=coil from=27 to=48 evalue=NA)
seg (db=Seg db_id=seg from=4 to=12)
zf-dskA_traR (db=HMMPfam db_id=PF01258 from=99 to=133 evalue=1.3e-09 interpro_id=IPR000962 interpro_description=Zinc finger, DksA/TraR C4-type GO=Molecular Function: zinc ion binding (GO:0008270))
ACD13_26_8

Not on your lists

comp(5711..6313)
DNA (603bp) protein (201aa)
seg (db=Seg db_id=seg from=97 to=114)
transmembrane_regions (db=TMHMM db_id=tmhmm from=178 to=195)
transmembrane_regions (db=TMHMM db_id=tmhmm from=144 to=163)
transmembrane_regions (db=TMHMM db_id=tmhmm from=109 to=131)
ACD13_26_9

Not on your lists

6343..6804
DNA (462bp) protein (154aa)
seg (db=Seg db_id=seg from=55 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=110)
transmembrane_regions (db=TMHMM db_id=tmhmm from=131 to=151)
ACD13_26_10
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(6811..7275)
DNA (465bp) protein (155aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z8X1_9FIRM (db=UNIREF evalue=4.0e-29 bit_score=129.0 identity=47.29 coverage=81.9354838709677)
HISTIDINE TRIAD (HIT) PROTEIN (db=HMMPanther db_id=PTHR23089 from=16 to=120 evalue=0.00053 interpro_id=IPR001310 interpro_description=Histidine triad (HIT) protein)
HIT-like (db=superfamily db_id=SSF54197 from=1 to=143 evalue=1.3e-21 interpro_id=IPR011146 interpro_description=Histidine triad-like motif GO=Molecular Function: catalytic activity (GO:0003824))
ACD13_26_11
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(7272..7886)
DNA (615bp) protein (205aa)
hypothetical protein
CYTH-like phosphatases (db=superfamily db_id=SSF55154 from=7 to=170 evalue=2.0e-17 interpro_id=IPR004206 interpro_description=mRNA capping enzyme, beta subunit GO=Molecular Function: polynucleotide 5'-phosphatase activity (GO:0004651), Molecular Function: protein binding (GO:0005515), Biological Process: mRNA capping (GO:0006370), Cellular Component: mRNA cap methyltransferase complex (GO:0031533))
CYTH (db=HMMPfam db_id=PF01928 from=8 to=174 evalue=5.2e-09 interpro_id=IPR008172 interpro_description=Adenylate cyclase GO=Molecular Function: adenylate cyclase activity (GO:0004016), Biological Process: cAMP biosynthetic process (GO:0006171))
no description (db=Gene3D db_id=G3DSA:2.40.320.10 from=8 to=178 evalue=7.4e-08)
ACD13_26_12
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(7936..8784)
DNA (849bp) protein (283aa)
7936..8784 - (rbs_motif=ATA rbs_spacer=5bp)
Uncharacterized protein {ECO:0000313|EMBL:KKR64206.1}; TaxID=1618553 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA1_40_43.;"
ACD13_26_13

Not on your lists

comp(8967..10289)
DNA (1323bp) protein (441aa)
hypothetical protein
hypothetical protein
Replicative DNA helicase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD56_THET1 (db=UNIREF evalue=9.0e-126 bit_score=454.0 identity=53.0 coverage=97.0521541950113)
DnaB: replicative DNA helicase (db=HMMTigr db_id=TIGR00665 from=10 to=437 evalue=2.6e-215 interpro_id=IPR007692 interpro_description=DNA helicase, DnaB type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA helicase activity (GO:0003678), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260))
ACD13_26_14
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(10335..10988)
DNA (654bp) protein (218aa)
Zn-dependent hydrolase of the beta-lactamase fold-like protein
Zn-dependent hydrolase of the beta-lactamase fold-like protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDI8_THET1 (db=UNIREF evalue=3.0e-43 bit_score=177.0 identity=51.39 coverage=95.8715596330275)
seg (db=Seg db_id=seg from=109 to=121)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=1 to=165 evalue=2.6e-28)
ACD13_26_15
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

11102..12070
DNA (969bp) protein (323aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=292 to=307)
seg (db=Seg db_id=seg from=185 to=204)
seg (db=Seg db_id=seg from=61 to=73)
ACD13_26_16
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

Not on your lists


12211..13116
DNA (906bp) protein (302aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
seg (db=Seg db_id=seg from=125 to=140)
HISTIDYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11476 from=7 to=301 evalue=1.3e-81 interpro_id=IPR004516 interpro_description=Histidyl-tRNA synthetase, class IIa GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: histidine-tRNA ligase activity (GO:0004821), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: histidyl-tRNA aminoacylation (GO:0006427))
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=7 to=301 evalue=2.7e-76)
ACD13_26_17
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

13122..14033
DNA (912bp) protein (304aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=185 to=204)
transmembrane_regions (db=TMHMM db_id=tmhmm from=219 to=241)
transmembrane_regions (db=TMHMM db_id=tmhmm from=253 to=272)
transmembrane_regions (db=TMHMM db_id=tmhmm from=276 to=294)
ACD13_26_18
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists


14037..14342
DNA (306bp) protein (102aa)
rpmE; 50S ribosomal protein L31
coiled-coil (db=Coil db_id=coil from=68 to=89 evalue=NA)
RIBOSOMAL_L31 (db=PatternScan db_id=PS01143 from=35 to=56 evalue=0.0 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L31: ribosomal protein L31 (db=HMMTigr db_id=TIGR00105 from=1 to=67 evalue=4.2e-29 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD13_26_19
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

14358..15062
DNA (705bp) protein (235aa)
Peptide chain release factor 1
PEPTIDE CHAIN RELEASE FACTOR 1 (db=HMMPanther db_id=PTHR11075:SF9 from=9 to=234 evalue=5.6e-99)
PEPTIDE CHAIN RELEASE FACTOR (db=HMMPanther db_id=PTHR11075 from=9 to=234 evalue=5.6e-99)
Release factor (db=superfamily db_id=SSF75620 from=9 to=227 evalue=6.1e-61)
ACD13_26_20
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(15063..16205)
DNA (1143bp) protein (381aa)
Trypsin
seg (db=Seg db_id=seg from=54 to=75)
seg (db=Seg db_id=seg from=9 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
ACD13_26_21
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(16253..17488)
DNA (1236bp) protein (412aa)
hypothetical protein
seg (db=Seg db_id=seg from=121 to=132)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
prc: C-terminal processing peptidase (db=HMMTigr db_id=TIGR00225 from=70 to=409 evalue=6.0e-89 interpro_id=IPR004447 interpro_description=Peptidase S41A, C-terminal peptidase GO=Biological Process: proteolysis (GO:0006508), Molecular Function: serine-type peptidase activity (GO:0008236))
ACD13_26_22

Not on your lists


comp(17544..17801)
DNA (258bp) protein (86aa)
30S ribosomal protein S18
30S RIBOSOMAL PROTEIN S18 (db=HMMPanther db_id=PTHR13479 from=19 to=85 evalue=3.0e-20 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S18 (db=HMMPanther db_id=PTHR13479:SF16 from=19 to=85 evalue=3.0e-20)
S18: ribosomal protein S18 (db=HMMTigr db_id=TIGR00165 from=15 to=83 evalue=4.0e-20 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD13_26_23
GWD2_OP11_40_19, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(17805..18314)
DNA (510bp) protein (170aa)
hypothetical protein
seg (db=Seg db_id=seg from=148 to=165)
seg (db=Seg db_id=seg from=122 to=136)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=3 to=169 evalue=2.3e-49 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ACD13_26_24
GWA1_OP11_40_43_partial, Woesebacteria, Microgenomates, Bacteria

Not on your lists


comp(18315..18602)
DNA (288bp) protein (96aa)
SSU ribosomal protein S6P
Ribosomal protein S6 n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L4M1_RUMHA (db=UNIREF evalue=2.0e-09 bit_score=64.3 identity=32.26 coverage=95.8333333333333)
seg (db=Seg db_id=seg from=12 to=21)
Ribosomal_S6 (db=HMMPfam db_id=PF01250 from=2 to=92 evalue=6.9e-22 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD13_26_25
GWC2_OP11_40_30, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(18649..19431)
DNA (783bp) protein (261aa)
ychF; GTP-dependent nucleic acid-binding protein EngD
GTP-BINDING PROTEIN-RELATED (db=HMMPanther db_id=PTHR23305 from=1 to=260 evalue=8.1e-100)
GTP-BINDING PROTEIN (db=HMMPanther db_id=PTHR23305:SF4 from=1 to=260 evalue=8.1e-100 interpro_id=IPR004396 interpro_description=Conserved hypothetical protein CHP00092 GO=Molecular Function: GTP binding (GO:0005525))
no description (db=Gene3D db_id=G3DSA:3.10.20.30 from=154 to=257 evalue=9.0e-38 interpro_id=IPR012675 interpro_description=Beta-grasp fold, ferredoxin-type)
Displaying 25 items

View Taxonomy