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ACD13_41

Alias: ACD13_29641.9767.19

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD13_41_1
RIFOXYB1_FULL_OP11_Woesebacteria_41_13_curated, Woesebacteria, Microgenomates, Bacteria

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753..1976
DNA (1224bp) protein (408aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=377 to=398 evalue=NA)
coiled-coil (db=Coil db_id=coil from=351 to=372 evalue=NA)
coiled-coil (db=Coil db_id=coil from=218 to=239 evalue=NA)
ACD13_41_2

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2004..3083
DNA (1080bp) protein (360aa)
RpoD family RNA polymerase sigma-70 subunit
coiled-coil (db=Coil db_id=coil from=61 to=82 evalue=NA)
seg (db=Seg db_id=seg from=224 to=238)
coiled-coil (db=Coil db_id=coil from=28 to=49 evalue=NA)
ACD13_41_3

Not on your lists

comp(3152..4096)
DNA (945bp) protein (315aa)
L-threonine 3-dehydrogenase
NAD-dependent epimerase/dehydratase n=1 Tax=Meiothermus ruber DSM 1279 RepID=D3PSU5_MEIRD (db=UNIREF evalue=4.0e-89 bit_score=331.0 identity=49.68 coverage=98.4126984126984)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=6 to=312 evalue=5.5e-116)
L-THREONINE 3-DEHYDROGENASE (db=HMMPanther db_id=PTHR10366:SF12 from=6 to=312 evalue=5.5e-116)
ACD13_41_4

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comp(4093..5265)
DNA (1173bp) protein (391aa)
bioF; 8-amino-7-oxononanoate synthase
seg (db=Seg db_id=seg from=58 to=67)
seg (db=Seg db_id=seg from=84 to=100)
AA_TRANSFER_CLASS_2 (db=PatternScan db_id=PS00599 from=235 to=244 evalue=0.0 interpro_id=IPR001917 interpro_description=Aminotransferase, class-II, pyridoxal-phosphate binding site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity (GO:0016740))
ACD13_41_5

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5443..6075
DNA (633bp) protein (211aa)
peptidase S14 ClpP
ClpP/crotonase (db=superfamily db_id=SSF52096 from=2 to=166 evalue=3.8e-36)
CLP_protease (db=HMMPfam db_id=PF00574 from=32 to=166 evalue=1.7e-28 interpro_id=IPR001907 interpro_description=Peptidase S14, ClpP GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
no description (db=Gene3D db_id=G3DSA:3.90.226.10 from=8 to=166 evalue=4.1e-26)
ACD13_41_6

Not on your lists

6079..6183
DNA (105bp) protein (35aa)
6079..6183 + (rbs_motif=ATAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE12915.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_41_7

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6258..7268
DNA (1011bp) protein (337aa)
Predicted protein n=1 Tax=Enterococcus casseliflavus EC30 RepID=C9AZN6_ENTCA (db=UNIREF evalue=6.0e-14 bit_score=82.0 identity=32.81 coverage=36.4985163204748)
seg (db=Seg db_id=seg from=178 to=198)
Uncharacterized protein {ECO:0000313|EMBL:EKE12916.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_41_8

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comp(7422..7688)
DNA (267bp) protein (89aa)
7422..7688 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE12917.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_41_9

Not on your lists

7971..8579
DNA (609bp) protein (203aa)
RNA polymerase subunit sigma-24
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=23 to=181 evalue=1.2e-39 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=2 to=115 evalue=2.4e-23 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=12 to=98 evalue=3.3e-19)
ACD13_41_10

Not on your lists

comp(8623..8814)
DNA (192bp) protein (64aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=15 to=31)
Uncharacterized protein {ECO:0000313|EMBL:EKE12919.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_41_11
RBG_16_OP11_Gottesmanbacteria_52_11_curated, Gottesmanbacteria, Microgenomates, Bacteria

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comp(8885..9559)
DNA (675bp) protein (225aa)
LysM domain protein
LysM domain protein n=1 Tax=Enterococcus faecium E980 RepID=D4QKE5_ENTFC (db=UNIREF evalue=3.0e-25 bit_score=118.0 identity=39.46 coverage=77.3333333333333)
seg (db=Seg db_id=seg from=66 to=86)
coiled-coil (db=Coil db_id=coil from=126 to=147 evalue=NA)
ACD13_41_12

Not on your lists

9594..9806
DNA (213bp) protein (71aa)
transcriptional coactivator/pterin dehydratase
Pterin_4a (db=HMMPfam db_id=PF01329 from=6 to=69 evalue=1.2e-17 interpro_id=IPR001533 interpro_description=Transcriptional coactivator/pterin dehydratase GO=Biological Process: tetrahydrobiopterin biosynthetic process (GO:0006729), Molecular Function: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity (GO:0008124))
PCD-like (db=superfamily db_id=SSF55248 from=6 to=71 evalue=1.1e-16 interpro_id=IPR001533 interpro_description=Transcriptional coactivator/pterin dehydratase GO=Biological Process: tetrahydrobiopterin biosynthetic process (GO:0006729), Molecular Function: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity (GO:0008124))
no description (db=Gene3D db_id=G3DSA:3.30.1360.20 from=1 to=71 evalue=2.0e-13 interpro_id=IPR001533 interpro_description=Transcriptional coactivator/pterin dehydratase GO=Biological Process: tetrahydrobiopterin biosynthetic process (GO:0006729), Molecular Function: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity (GO:0008124))
Displaying 12 items

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