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ACD13_63

Alias: ACD13_39020.9813.21

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD13_63_1

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1..804
DNA (804bp) protein (268aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=235 to=253)
transmembrane_regions (db=TMHMM db_id=tmhmm from=201 to=220)
transmembrane_regions (db=TMHMM db_id=tmhmm from=169 to=188)
ACD13_63_2

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1416..2150
DNA (735bp) protein (245aa)
Alpha-L-glutamate ligase family protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JV23_9GAMM (db=UNIREF evalue=9.0e-22 bit_score=107.0 identity=48.6 coverage=43.265306122449)
alpha-L-glutamate ligase
RimK (db=HMMPfam db_id=PF08443 from=43 to=81 evalue=8.7e-05 interpro_id=IPR013651 interpro_description=ATP-grasp fold, RimK-type)
Alpha-L-glutamate ligase family protein {ECO:0000313|EMBL:EKE12560.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_63_3

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2208..3110
DNA (903bp) protein (301aa)
alpha-L-glutamate ligase, RimK family (db=KEGG evalue=2.0e-15 bit_score=86.7 identity=27.95 coverage=80.3986710963455)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=94 to=299 evalue=1.5e-30)
RimK (db=HMMPfam db_id=PF08443 from=105 to=278 evalue=4.4e-23 interpro_id=IPR013651 interpro_description=ATP-grasp fold, RimK-type)
RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN (db=HMMPanther db_id=PTHR21621 from=1 to=275 evalue=3.8e-15)
ACD13_63_4

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3107..4045
DNA (939bp) protein (313aa)
seg (db=Seg db_id=seg from=185 to=197)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=109 to=312 evalue=1.2e-23)
RimK (db=HMMPfam db_id=PF08443 from=109 to=293 evalue=1.9e-12 interpro_id=IPR013651 interpro_description=ATP-grasp fold, RimK-type)
ATP_GRASP (db=ProfileScan db_id=PS50975 from=112 to=312 evalue=14.953 interpro_id=IPR011761 interpro_description=ATP-grasp fold GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: ATP binding (GO:0005524))
ACD13_63_5

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comp(4321..4731)
DNA (411bp) protein (137aa)
seg (db=Seg db_id=seg from=112 to=125)
seg (db=Seg db_id=seg from=6 to=22)
seg (db=Seg db_id=seg from=39 to=67)
RIBOSOMAL PROTEIN L7/L12 (db=HMMPanther db_id=PTHR11809 from=1 to=136 evalue=1.5e-27)
ACD13_63_6

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comp(4759..5379)
DNA (621bp) protein (207aa)
ribosomal protein L10P
50S ribosomal protein L10 n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPU4_9DELT (db=UNIREF evalue=4.0e-23 bit_score=111.0 identity=40.56 coverage=84.5410628019324)
Ribosomal_L10 (db=HMMPfam db_id=PF00466 from=35 to=135 evalue=1.7e-22 interpro_id=IPR001790 interpro_description=Ribosomal protein L10 GO=Cellular Component: intracellular (GO:0005622), Biological Process: ribosome biogenesis (GO:0042254))
Q30KS2_CANFA_Q30KS2; (db=BlastProDom db_id=PD968187 from=40 to=206 evalue=0.0003)
ACD13_63_7

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comp(5424..5666)
DNA (243bp) protein (81aa)
5424..5666 - (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE12565.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_63_8

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comp(5713..6501)
DNA (789bp) protein (263aa)
rplA; 50S ribosomal protein L1
Ribosomal protein L1 (db=superfamily db_id=SSF56808 from=81 to=261 evalue=1.7e-34 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
Ribosomal_L1 (db=HMMPfam db_id=PF00687 from=139 to=257 evalue=1.7e-27 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
RIBOSOMAL PROTEIN L7AE FAMILY MEMBER (db=HMMPanther db_id=PTHR23105 from=88 to=261 evalue=9.4e-27)
ACD13_63_9

Not on your lists

7103..7303
DNA (201bp) protein (67aa)
7103..7303 + (rbs_motif=ATAAT rbs_spacer=8bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE12554.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_63_10

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7431..7742
DNA (312bp) protein (104aa)
seg (db=Seg db_id=seg from=71 to=86)
seg (db=Seg db_id=seg from=6 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
T4_deiodinase (db=HMMPfam db_id=PF00837 from=5 to=89 evalue=0.00014 interpro_id=IPR000643 interpro_description=Iodothyronine deiodinase GO=Molecular Function: thyroxine 5'-deiodinase activity (GO:0004800), Biological Process: oxidation reduction (GO:0055114))
ACD13_63_11

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comp(7912..8541)
DNA (630bp) protein (210aa)
hypothetical protein
NUSG (db=PatternScan db_id=PS01014 from=192 to=201 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=40 to=209 evalue=5.3e-72 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00738 from=37 to=145 evalue=2.8e-38 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
ACD13_63_12

Not on your lists

comp(8544..8729)
DNA (186bp) protein (62aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
SecE (db=HMMPfam db_id=PF00584 from=4 to=58 evalue=3.8e-18 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=4 to=61 evalue=3.8e-17 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_63_13

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8809..9270
DNA (462bp) protein (154aa)
8809..9270 + (rbs_motif=ATAAT rbs_spacer=7bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE12558.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD13_63_14

Not on your lists

9267..9851
DNA (585bp) protein (195aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
seg (db=Seg db_id=seg from=152 to=165)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=7 to=194 evalue=6.2e-44 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=19 to=177 evalue=5.9e-33)
Displaying 14 items

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