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ACD13_94

Alias: ACD13_23174.9668.21

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD13_94_1

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comp(3..185)
DNA (183bp) protein (61aa)
dnaX; DNA polymerase III subunit gamma/tau
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=30 to=61 evalue=2.5e-09)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=6 to=61 evalue=1.2e-08)
AAA (db=HMMPfam db_id=PF00004 from=38 to=58 evalue=0.0002 interpro_id=IPR003959 interpro_description=ATPase, AAA-type, core GO=Molecular Function: ATP binding (GO:0005524))
ACD13_94_2

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comp(192..590)
DNA (399bp) protein (133aa)
seg (db=Seg db_id=seg from=19 to=32)
Metalloproteases ("zincins"), catalytic domain (db=superfamily db_id=SSF55486 from=2 to=130 evalue=6.4e-18)
UPF0054 (db=HMMPfam db_id=PF02130 from=19 to=128 evalue=1.2e-17 interpro_id=IPR002036 interpro_description=Uncharacterised protein family UPF0054 GO=Molecular Function: metallopeptidase activity (GO:0008237), Molecular Function: zinc ion binding (GO:0008270))
no description (db=Gene3D db_id=G3DSA:3.40.390.30 from=5 to=127 evalue=7.3e-14)
ACD13_94_3

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comp(1116..1469)
DNA (354bp) protein (118aa)
hypothetical protein
HISTIDINE TRIAD (HIT) PROTEIN (db=HMMPanther db_id=PTHR23089 from=20 to=114 evalue=1.7e-25 interpro_id=IPR001310 interpro_description=Histidine triad (HIT) protein)
HIT_1 (db=PatternScan db_id=PS00892 from=86 to=104 evalue=0.0 interpro_id=IPR019808 interpro_description=Histidine triad, conserved site)
HIT-like (db=superfamily db_id=SSF54197 from=1 to=112 evalue=3.2e-36 interpro_id=IPR011146 interpro_description=Histidine triad-like motif GO=Molecular Function: catalytic activity (GO:0003824))
ACD13_94_4

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comp(1470..2699)
DNA (1230bp) protein (410aa)
prolyl-tRNA synthetase
Proline--tRNA ligase n=1 Tax=Turicibacter sp. PC909 RepID=D4W313_9FIRM (db=UNIREF evalue=7.0e-90 bit_score=334.0 identity=41.12 coverage=98.2926829268293)
TRNA SYNTHETASE-RELATED (db=HMMPanther db_id=PTHR11451 from=38 to=405 evalue=9.4e-127)
ACD13_94_5

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comp(2714..3778)
DNA (1065bp) protein (355aa)
membrane-associated zinc metalloprotease
transmembrane_regions (db=TMHMM db_id=tmhmm from=312 to=334)
transmembrane_regions (db=TMHMM db_id=tmhmm from=265 to=287)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
ACD13_94_6

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comp(3955..4482)
DNA (528bp) protein (176aa)
ribosome recycling factor
RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF) (db=HMMPanther db_id=PTHR20982:SF3 from=1 to=175 evalue=4.3e-59 interpro_id=IPR015998 interpro_description=Ribosome recycling factor, bacterial-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: translational termination (GO:0006415))
RIBOSOME RECYCLING FACTOR (db=HMMPanther db_id=PTHR20982 from=1 to=175 evalue=4.3e-59 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
RRF (db=HMMPfam db_id=PF01765 from=8 to=173 evalue=7.1e-52 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
ACD13_94_7

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comp(4509..4964)
DNA (456bp) protein (152aa)
translation elongation factor EFTs/EF1B dimerization
ELONGATION FACTOR TS (db=HMMPanther db_id=PTHR11741 from=7 to=147 evalue=5.1e-28 interpro_id=IPR001816 interpro_description=Translation elongation factor EFTs/EF1B GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
Elongation factor Ts (EF-Ts), dimerisation domain (db=superfamily db_id=SSF54713 from=54 to=150 evalue=3.7e-25 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
no description (db=Gene3D db_id=G3DSA:3.30.479.20 from=57 to=149 evalue=3.6e-21 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ACD13_94_8

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comp(5030..5710)
DNA (681bp) protein (227aa)
rpsB; 30S ribosomal protein S2
RIBOSOMAL_S2_2 (db=PatternScan db_id=PS00963 from=160 to=184 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL_S2_1 (db=PatternScan db_id=PS00962 from=8 to=19 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsB_bact: ribosomal protein S2 (db=HMMTigr db_id=TIGR01011 from=5 to=226 evalue=1.3e-94 interpro_id=IPR005706 interpro_description=Ribosomal protein S2, bacteria/mitochondria/plastid GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD13_94_9

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comp(5847..6239)
DNA (393bp) protein (131aa)
seg (db=Seg db_id=seg from=32 to=43)
seg (db=Seg db_id=seg from=99 to=113)
FTCD_C (db=HMMPfam db_id=PF04961 from=1 to=124 evalue=2.3e-30 interpro_id=IPR007044 interpro_description=Cyclodeaminase/cyclohydrolase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: cellular metabolic process (GO:0044237))
Methenyltetrahydrofolate cyclohydrolase-like (db=superfamily db_id=SSF101262 from=1 to=124 evalue=1.3e-25 interpro_id=IPR007044 interpro_description=Cyclodeaminase/cyclohydrolase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: cellular metabolic process (GO:0044237))
ACD13_94_10

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comp(6404..7282)
DNA (879bp) protein (293aa)
Putative uncharacterized protein n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0C9_9BACT (db=UNIREF evalue=1.0e-83 bit_score=313.0 identity=50.17 coverage=97.9522184300341)
glutamate formiminotransferase (EC:2.1.2.5)
FtcD: glutamate formiminotransferase (db=HMMTigr db_id=TIGR02024 from=1 to=292 evalue=4.4e-129 interpro_id=IPR004227 interpro_description=Formiminotransferase catalytic domain GO=Molecular Function: folic acid binding (GO:0005542), Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity (GO:0016740))
ACD13_94_11

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comp(7299..7964)
DNA (666bp) protein (222aa)
dTMP kinase (EC:2.7.4.9)
THYMIDYLATE_KINASE (db=PatternScan db_id=PS01331 from=101 to=113 evalue=0.0 interpro_id=IPR018095 interpro_description=Thymidylate kinase, conserved site GO=Molecular Function: thymidylate kinase activity (GO:0004798), Molecular Function: ATP binding (GO:0005524), Biological Process: dTDP biosynthetic process (GO:0006233))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=8 to=220 evalue=2.4e-42)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=8 to=219 evalue=3.3e-39)
ACD13_94_12

Not on your lists

comp(7975..8727)
DNA (753bp) protein (251aa)
deoxynucleoside kinase
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=14 to=216 evalue=4.2e-29)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=13 to=197 evalue=7.4e-27)
DEOXYGUANOSINE KINASE/DEOXYADENOSINE KINASE (db=HMMPanther db_id=PTHR10513:SF4 from=20 to=183 evalue=8.1e-22)
ACD13_94_13

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8828..9706
DNA (879bp) protein (293aa)
Thymidylate synthase
THYMIDYLATE_SYNTHASE (db=PatternScan db_id=PS00091 from=185 to=212 evalue=0.0 interpro_id=IPR020940 interpro_description=Thymidylate synthase, active site GO=Molecular Function: thymidylate synthase activity (GO:0004799), Biological Process: dTMP biosynthetic process (GO:0006231))
thym_sym: thymidylate synthase (db=HMMTigr db_id=TIGR03284 from=21 to=292 evalue=4.5e-106 interpro_id=IPR000398 interpro_description=Thymidylate synthase GO=Molecular Function: thymidylate synthase activity (GO:0004799), Biological Process: dTMP biosynthetic process (GO:0006231))
Thymidylate synthase/dCMP hydroxymethylase (db=superfamily db_id=SSF55831 from=17 to=290 evalue=4.5e-105 interpro_id=IPR000398 interpro_description=Thymidylate synthase GO=Molecular Function: thymidylate synthase activity (GO:0004799), Biological Process: dTMP biosynthetic process (GO:0006231))
Displaying 13 items

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