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07M_4_2014_scaffold_681

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_681_1

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2..424
-----------------
DNA (423bp)
protein (141aa)
aba:Acid345_4592 D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] id=4756 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
07M_4_2014_scaffold_681_2

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428..1309
-----------------
DNA (882bp)
protein (294aa)
Uncharacterized protein {ECO:0000313|EMBL:EKE14506.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transmembrane_regions id=5801199 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
07M_4_2014_scaffold_681_3
CG_Woesearch_01, Woesearchaeota, Archaea

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1365..1712
-----------------
DNA (348bp)
protein (116aa)
FeS cluster assembly scaffold protein NifU n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D378_METSW
FeS cluster assembly scaffold protein NifU
Tax=CG_Woesearch_01
07M_4_2014_scaffold_681_4
RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated, Falkowbacteria, Parcubacteria, Bacteria

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comp(2198..3517)
-----------------
DNA (1320bp)
protein (440aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B2E4B7 rbh
peptidase M23
Tax=RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated
07M_4_2014_scaffold_681_5
CG_Kuenen_01, Kuenenbacteria, Parcubacteria, Bacteria

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comp(3546..5009)
-----------------
DNA (1464bp)
protein (488aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=uncultured bacterium RepID=K2EIB3_9BACT
Tax=CG_Kuenen_01
07M_4_2014_scaffold_681_6
unknown

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comp(5009..5245)
-----------------
DNA (237bp)
protein (79aa)

This feature has no annotations

07M_4_2014_scaffold_681_7
GWC2_OD1_41_17, Magasanikbacteria, Parcubacteria, Bacteria

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comp(5263..6003)
-----------------
DNA (741bp)
protein (247aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR98858.1}; TaxID=1619048 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Magasanikbacteria) bacterium GW2011_GWC2_41_17.;"
hypothetical protein id=53586 bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
07M_4_2014_scaffold_681_8
RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated, Falkowbacteria, Parcubacteria, Bacteria

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comp(5990..6739)
-----------------
DNA (750bp)
protein (250aa)
glycosyl transferase family protein (EC:2.4.1.187)
Glycosyltransferase WecB/TagA/CpsF family id=3013003 bin=GWC1_OD1_38_17 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Tax=RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated
07M_4_2014_scaffold_681_9
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

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comp(6729..7280)
-----------------
DNA (552bp)
protein (184aa)
2'-5' RNA ligase id=2270469 bin=GWB2_Nitrospirae_rel_47_37 species=Thermococcus sibiricus genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=GWB2_Nitrospirae_47_37_curated
07M_4_2014_scaffold_681_10
CG_CPR04_01, CG_CPR04, Bacteria

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7343..8356
-----------------
DNA (1014bp)
protein (338aa)
MoaA/nifB/pqqE family protein n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YKJ6_THEYD
MoaA/nifB/pqqE family protein
Tax=CG_CPR04_01
07M_4_2014_scaffold_681_11
Parcubacteria bacterium GW2011_GWC2_49_9, Parcubacteria, Bacteria

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8362..9732
-----------------
DNA (1371bp)
protein (457aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW16607.1}; TaxID=1618934 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_49_9.;"
hypothetical protein id=5801206 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
putative lipoprotein
07M_4_2014_scaffold_681_12
RBG_13_OD1_Falkowbacteria_36_9_curated, Falkowbacteria, Parcubacteria, Bacteria

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9734..10528
-----------------
DNA (795bp)
protein (265aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZZR9_9BACT
AMMECR1 domain-containing protein
Tax=RBG_13_OD1_Falkowbacteria_36_9_curated
07M_4_2014_scaffold_681_13
R_RIF_OD1_01_48_11, RIF-OD1-1, Parcubacteria, Bacteria

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10528..11286
-----------------
DNA (759bp)
protein (253aa)
F420-0:gamma-glutamyl ligase n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0L2M0_METHD
F420-0:gamma-glutamyl ligase
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_01_48_11_curated
07M_4_2014_scaffold_681_14

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11315..11995
-----------------
DNA (681bp)
protein (227aa)
Uncharacterized protein {ECO:0000313|EMBL:KKO02695.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
id=3486291 bin=GWA1_ZB2_49_26 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
07M_4_2014_scaffold_681_15
CG_OP9-01, Atribacteria, Bacteria

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12070..12588
-----------------
DNA (519bp)
protein (173aa)
AMMECR1 domain protein n=1 Tax=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) RepID=A8F4B8_THELT
AMMECR1 domain-containing protein
Tax=CG_OP9-01
07M_4_2014_scaffold_681_16
RBG_13_OD1_Falkowbacteria_36_9_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

12722..14617
-----------------
DNA (1896bp)
protein (632aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A050_9BACT
primosomal protein N'
Tax=RBG_13_OD1_Falkowbacteria_36_9_curated
07M_4_2014_scaffold_681_17
RHI_SM2F11_42_22, SM2F11, Bacteria

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14619..15101
-----------------
DNA (483bp)
protein (161aa)
peptide deformylase (EC:3.5.1.88)
hypothetical protein id=5801209 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
07M_4_2014_scaffold_681_18
RBG_13_OD1_Falkowbacteria_36_9_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

15073..16020
-----------------
DNA (948bp)
protein (316aa)
Methionyl-tRNA formyltransferase id=4838850 bin=GWC2_OD1_43_27 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
methionyl-tRNA formyltransferase
Tax=RBG_13_OD1_Falkowbacteria_36_9_curated
07M_4_2014_scaffold_681_19
Parcubacteria bacterium GW2011_GWC2_49_9, Parcubacteria, Bacteria

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comp(16017..17576)
-----------------
DNA (1560bp)
protein (520aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW16614.1}; TaxID=1618934 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_49_9.;"
hypothetical protein id=5801211 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A rbh
hypothetical protein
07M_4_2014_scaffold_681_20
unknown

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comp(17580..18026)
-----------------
DNA (447bp)
protein (149aa)

This feature has no annotations

07M_4_2014_scaffold_681_21
unknown

Not on your lists

comp(18023..18832)
-----------------
DNA (810bp)
protein (270aa)

This feature has no annotations

07M_4_2014_scaffold_681_22
RHI_RIF_OD1_01_48_17, RIF-OD1-1, Parcubacteria, Bacteria

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comp(19526..20512)
-----------------
DNA (987bp)
protein (329aa)
Efflux ABC transporter permease protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6X8A8_9FIRM
ABC transporter permease
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_01_48_17_curated
Displaying 22 items

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