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bjp_ig2599_scaffold_1690

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2599_scaffold_1690_trna_3
unknown

Not on your lists

comp(2..73)
DNA (72bp)
transferRNA
bjp_ig2599_scaffold_1690_1

Not on your lists

187..756
DNA (570bp) protein (190aa)
DNA-binding response regulator {ECO:0000313|EMBL:KKQ57214.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
two-component system response regulator id=16568 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
two component AraC family transcriptional regulator
bjp_ig2599_scaffold_1690_2
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(766..1896)
DNA (1131bp) protein (377aa)
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
RNA polymerase sigma factor id=2669954 bin=GWA1_ZB2_49_26 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RNA polymerase, sigma 70 subunit, rpod subfamily
bjp_ig2599_scaffold_1690_3
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(1893..3599)
DNA (1707bp) protein (569aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
dnaG; DNA primase (EC:2.7.7.-)
DNA primase id=2823715 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
bjp_ig2599_scaffold_1690_4
CG_CPR03_01, CG_CPR03, Bacteria

Not on your lists

3734..5596
DNA (1863bp) protein (621aa)
modification methylase Tax=CG_CPR03_01
PspGI methylase id=4807157 bin=GWC2_Elusimicrobia_51_8 species=Pyrococcus sp. GI-H genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
modification methylase
bjp_ig2599_scaffold_1690_5
R_RIF_OD1_13_53_17, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(5593..6348)
DNA (756bp) protein (252aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_53_17_curated
bjp_ig2599_scaffold_1690_6
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(6345..9926)
DNA (3582bp) protein (1194aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVH9_9BACT rbh
bjp_ig2599_scaffold_1690_7
R_RIF_OD1_09_54_12, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(9984..10799)
DNA (816bp) protein (272aa)
Amidohydrolase family protein n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LUK7_9FIRM id=131043 bin=ACD7 species=Selenomonas sputigena genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
amidohydrolase 2 Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_09_54_12_curated
amidohydrolase
bjp_ig2599_scaffold_1690_8

Not on your lists

comp(10806..11249)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FBR2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKT40230.1}; TaxID=1618830 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_44_13.;"
GxxExxY protein
bjp_ig2599_scaffold_1690_9
GWF2_OD1_40_10, Parcubacteria, Bacteria

Not on your lists

comp(11271..14456)
DNA (3186bp) protein (1062aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037C611A
DNA-directed RNA polymerase subunit beta Tax=GWF2_OD1_40_10
bjp_ig2599_scaffold_1690_10
GWC2_OD1_44_9, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(14822..15526)
DNA (705bp) protein (235aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PJD2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KKT84413.1}; TaxID=1618658 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_44_9.;"
hypothetical protein
bjp_ig2599_scaffold_1690_11
RLO_OD1_41_13, Parcubacteria, Bacteria

Not on your lists

comp(15481..16182)
DNA (702bp) protein (234aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_41_13_curated
Transposase id=4390398 bin=GWC2_OP3_44_8 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
hypothetical protein
bjp_ig2599_scaffold_1690_12
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

comp(16230..17546)
DNA (1317bp) protein (439aa)
LicD Protein {ECO:0000313|EMBL:KKT20148.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
TPR domain-containing protein id=5803035 bin=OD1_GWC2_34_28 species=Clostridiales bacterium 1_7_47FAA genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
bjp_ig2599_scaffold_1690_13
R_OD1_45_26, Parcubacteria, Bacteria

Not on your lists

comp(17543..18193)
DNA (651bp) protein (217aa)
O-antigen ligase WaaL Tax=RIFCSPHIGHO2_01_FULL_OD1_45_26_curated
TPR domain-containing protein id=5803035 bin=OD1_GWC2_34_28 species=Clostridiales bacterium 1_7_47FAA genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
bjp_ig2599_scaffold_1690_14

Not on your lists

18279..19562
DNA (1284bp) protein (428aa)
Sugar transferase, PEP-CTERM system associated {ECO:0000313|EMBL:KKR60173.1}; TaxID=1618924 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_40_31.;"
Sugar transferase id=3506692 bin=GWC1_OD1_38_17 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
bjp_ig2599_scaffold_1690_15
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists

comp(19572..19790)
DNA (219bp) protein (73aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein id=3506532 bin=GWC1_OD1_38_17 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
bjp_ig2599_scaffold_1690_16
R_OD1_Nomurabacteria_39_18, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

19857..20303
DNA (447bp) protein (149aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_39_18_curated
hypothetical protein id=5227219 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
bjp_ig2599_scaffold_1690_17
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

20307..21824
DNA (1518bp) protein (506aa)
Translation initiation factor IF-2 protein {ECO:0000313|EMBL:KKT21411.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 id=5803475 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
translation initiation factor IF-2
bjp_ig2599_scaffold_1690_18
GWF2_OD1_38_76, Parcubacteria, Bacteria

Not on your lists

21837..22163
DNA (327bp) protein (109aa)
Ribosome-binding factor A n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWB6_9BACT
Ribosome-binding factor A {ECO:0000313|EMBL:KKQ82340.1}; TaxID=1618960 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_38_76.;"
bjp_ig2599_scaffold_1690_trna_1
unknown

Not on your lists

22164..22235
DNA (72bp)
transferRNA
bjp_ig2599_scaffold_1690_19
RIFOXYD2_FULL_OD1_52_8_curated, Parcubacteria, Bacteria

Not on your lists

22559..24019
DNA (1461bp) protein (487aa)
ABC transporter ATP-binding protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67QH3_SYMTH rbh
ABC transporter ATP-binding protein Tax=RIFOXYD2_FULL_OD1_52_8_curated
ABC transporter ATP-binding protein
bjp_ig2599_scaffold_1690_20
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(24000..25754)
DNA (1755bp) protein (585aa)
Recombinase n=1 Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LVL3_HIPMA
recombinase Tax=CG_CPR12_01
recombinase
bjp_ig2599_scaffold_1690_trna_2
unknown

Not on your lists

24190..24271
DNA (82bp)
transferRNA
Displaying 23 items

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