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bjp_ig2599_scaffold_4581

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2599_scaffold_4581_1
R_OD1_41_19, Parcubacteria, Bacteria

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3..470
DNA (468bp) protein (156aa)
putative Tyrosine recombinase xerD Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
recombinase; K04763 integrase/recombinase XerD id=5803170 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Tyrosine recombinase XerD
bjp_ig2599_scaffold_4581_2
Parcubacteria bacterium GW2011_GWD2_40_9, Parcubacteria, Bacteria

Not on your lists

comp(471..1925)
DNA (1455bp) protein (485aa)
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase {ECO:0000313|EMBL:KKR82631.1}; TaxID=1618943 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWD2_40_9.;"
polynucleotide adenylyltransferase id=5803166 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
polyA polymerase
bjp_ig2599_scaffold_4581_trna_3
unknown

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comp(1969..2040)
DNA (72bp)
transferRNA
bjp_ig2599_scaffold_4581_3
R_OD1_39_11, Parcubacteria, Bacteria

Not on your lists

2147..2536
DNA (390bp) protein (130aa)
hypothetical protein; K07460 putative endonuclease Tax=RIFCSPLOWO2_01_FULL_OD1_39_11_curated
UPF0102 protein HMPREF0072_1985 id=4209728 bin=GWF2_Planctomycetes_42_9 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
hypothetical protein
bjp_ig2599_scaffold_4581_trna_1
unknown

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2613..2683
DNA (71bp)
transferRNA
bjp_ig2599_scaffold_4581_trna_2
unknown

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2686..2756
DNA (71bp)
transferRNA
bjp_ig2599_scaffold_4581_4
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2830..3102)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PY42_9BACT
Histone-like bacterial dna-binding protein; K03530 DNA-binding protein HU-beta Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
HU, DNA-binding transcriptional regulator subunit beta
bjp_ig2599_scaffold_4581_5
Parcubacteria bacterium GW2011_GWE2_40_8, Parcubacteria, Bacteria

Not on your lists

comp(3212..4741)
DNA (1530bp) protein (510aa)
metal dependent phosphohydrolase (EC:3.1.4.16)
Ribonuclease Y {ECO:0000313|EMBL:KKR75692.1}; TaxID=1618951 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWE2_40_8.;"
phosphodiesterase; K06950 uncharacterized protein id=5803143 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
bjp_ig2599_scaffold_4581_6
RHI_OD1_Moranbacteria_40_10, Moranbacteria, Parcubacteria, Bacteria

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4844..6172
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000366C2F5
multi-sensor signal transduction histidine kinase Tax=RIFCSPHIGHO2_12_FULL_OD1_Moranbacteria_40_10_curated
multi-sensor hybrid histidine kinase
bjp_ig2599_scaffold_4581_7
GWA1_OD1_40_21, Parcubacteria, Bacteria

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6279..7094
DNA (816bp) protein (272aa)
DNA modification methylase n=1 Tax=Uncultured termite group 1 bacterium phylotype Rs-D17 RepID=B1GYY5_UNCTG id=5087243 bin=GWF1_OP11_31_35_complete species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
DNA modification methylase Tax=GWA1_OD1_40_21
DNA modification methylase
bjp_ig2599_scaffold_4581_8
RBG_13_Berkelbacteria_40_8_curated, Berkelbacteria, Bacteria

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7154..7705
DNA (552bp) protein (184aa)
hypothetical protein Tax=RBG_13_Berkelbacteria_40_8_curated
bjp_ig2599_scaffold_4581_9
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

7707..9272
DNA (1566bp) protein (522aa)
gpmI; phosphoglyceromutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
gpmI; phosphoglyceromutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase id=3736606 bin=GWC2_OD1_43_27 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
bjp_ig2599_scaffold_4581_10
R_OD1_45_48, Parcubacteria, Bacteria

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comp(9279..9851)
DNA (573bp) protein (191aa)
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit id=3486012 bin=GWA1_ZB2_49_26 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
bjp_ig2599_scaffold_4581_11
R_OD1_42_9, Parcubacteria, Bacteria

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comp(9894..10391)
DNA (498bp) protein (166aa)
RNA-binding protein Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
single-stranded nucleic acid binding R3H; K06346 spoIIIJ-associated protein id=5803199 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
jag; protein Jag
bjp_ig2599_scaffold_4581_12

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comp(10421..11158)
DNA (738bp) protein (246aa)
Preprotein translocase subunit YidC {ECO:0000313|EMBL:KKR60366.1}; TaxID=1618924 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_40_31.;"
60 kDa inner membrane insertion protein; K03217 preprotein translocase subunit YidC id=5803200 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
membrane protein insertase, yidc/oxa1 family
bjp_ig2599_scaffold_4581_13
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(11158..11424)
DNA (267bp) protein (89aa)
Ribonuclease P protein component n=1 Tax=Pseudanabaena sp. (strain PCC 6903) RepID=RNPA_PSEAO
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
bjp_ig2599_scaffold_4581_14
Parcubacteria bacterium GW2011_GWD2_40_9, Parcubacteria, Bacteria

Not on your lists

11560..12927
DNA (1368bp) protein (456aa)
Chromosomal replication initiator protein DnaA {ECO:0000313|EMBL:KKR82644.1}; TaxID=1618943 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWD2_40_9.;"
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein id=5803203 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
chromosomal replication initiation protein
bjp_ig2599_scaffold_4581_15

Not on your lists

13126..14172
DNA (1047bp) protein (349aa)
DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] id=5803204 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7)
Polymerase III subunit beta protein {ECO:0000313|EMBL:KKU76254.1}; TaxID=1618845 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_64.;"
bjp_ig2599_scaffold_4581_16
R_OD1_Jorgensenbacteria_45_20, Jorgensenbacteria, Parcubacteria, Bacteria

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14154..14765
DNA (612bp) protein (204aa)
Type-2 restriction enzyme DdeI n=1 Tax=Desulfomicrobium norvegicum (strain DSM 1741 / NCIMB 8310) RepID=T2D1_DESNO
restriction endonuclease Tax=RIFCSPHIGHO2_02_FULL_OD1_Jorgensenbacteria_45_20_curated
type II restriction enzyme
bjp_ig2599_scaffold_4581_17
Parcubacteria bacterium GW2011_GWA2_47_9, Parcubacteria, Bacteria

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comp(14762..16282)
DNA (1521bp) protein (507aa)
DNA methylase N-4/N-6 domain protein n=1 Tax=Methanoregula boonei (strain 6A8) RepID=A7I4Z4_METB6 rbh
Methylase N-4/N-6 domain protein {ECO:0000313|EMBL:KKU86772.1}; TaxID=1618849 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_9.;"
DNA methylase N-4/N-6 domain-containing protein
bjp_ig2599_scaffold_4581_18
GWB1_OP11_39_10, Woesebacteria, Microgenomates, Bacteria

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16547..16717
DNA (171bp) protein (57aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4L9Z8_RUMC1
Putative uncharacterized protein Tax=GWB1_OP11_39_10
hypothetical protein
bjp_ig2599_scaffold_4581_19

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16769..17608
DNA (840bp) protein (280aa)
Radical SAM protein n=1 Tax=Caldanaerobacter subterraneus subsp. yonseiensis KB-1 RepID=U5CHW3_THEYO
Uncharacterized protein {ECO:0000313|EMBL:KKO02743.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Radical SAM domain-containing protein
bjp_ig2599_scaffold_4581_20
unknown

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17695..18144
DNA (450bp) protein (150aa)

This feature has no annotations

bjp_ig2599_scaffold_4581_21

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18200..18469
DNA (270bp) protein (90aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU76255.1}; TaxID=1618845 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_64.;"
Displaying 24 items

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