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bjp_ig2599_scaffold_6805

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2599_scaffold_6805_1
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists

1..1293
DNA (1293bp) protein (431aa)
UvrD/REP helicase family protein Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
UvrD/REP helicase family protein id=5802117 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds) rbh
UvrD/REP helicase family protein
bjp_ig2599_scaffold_6805_2
R_OD1_39_11, Parcubacteria, Bacteria

Not on your lists


comp(1275..1520)
DNA (246bp) protein (82aa)
50S ribosomal protein L20 n=1 Tax=Thermus islandicus RepID=UPI0003B63160
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 Tax=RIFCSPLOWO2_01_FULL_OD1_39_11_curated
rplT; 50S ribosomal protein L20
bjp_ig2599_scaffold_6805_3
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(1742..2185)
DNA (444bp) protein (148aa)
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
translation initiation factor IF-3; K02520 translation initiation factor IF-3 id=5803010 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
infC; protein InfC
bjp_ig2599_scaffold_6805_4
GWB1_OD1_41_6_partial, Parcubacteria, Bacteria

Not on your lists

comp(2596..3051)
DNA (456bp) protein (152aa)
SsrA-binding protein Tax=GWB1_OD1_41_6_partial
SsrA-binding protein id=2965886 bin=GWA1_ZB2_49_26 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
smpB; SsrA-binding protein
bjp_ig2599_scaffold_6805_5
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

3395..4075
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037C730D
hypothetical protein; K07491 putative transposase Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
hypothetical protein
bjp_ig2599_scaffold_6805_6
GWF2_OD1_40_10, Parcubacteria, Bacteria

Not on your lists

4181..5848
DNA (1668bp) protein (556aa)
ftsH; cell division protein FtsH; K03798 cell division protease FtsH [EC:3.4.24.-] id=5803103 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH {ECO:0000313|EMBL:KKR37606.1}; TaxID=1618964 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_40_10.;"
bjp_ig2599_scaffold_6805_7
Parcubacteria bacterium GW2011_GWD2_40_9, Parcubacteria, Bacteria

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5842..5985
DNA (144bp) protein (48aa)
Lysyl-tRNA synthetase {ECO:0000313|EMBL:KKR82190.1}; TaxID=1618943 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWD2_40_9.;"
bjp_ig2599_scaffold_6805_8
R_OD1_Giovannonibacteria_43_16, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

6076..6354
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A4N2_9BACT
putative endonuclease containing a URI domain Tax=RIFCSPHIGHO2_02_OD1_Giovannonibacteria_43_16_curated
putative endonuclease containing a URI domain
bjp_ig2599_scaffold_6805_trna_1
unknown

Not on your lists

6345..6416
DNA (72bp)
transferRNA
bjp_ig2599_scaffold_6805_9
unknown

Not on your lists

6644..6970
DNA (327bp) protein (109aa)

This feature has no annotations

bjp_ig2599_scaffold_6805_10
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

comp(7033..9147)
DNA (2115bp) protein (705aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-); K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] id=5803096 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
ATP-dependent DNA helicase RecG Tax=GWB1_OD1_43_8
ATP-dependent DNA helicase RecG
bjp_ig2599_scaffold_6805_11
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(9173..9865)
DNA (693bp) protein (231aa)
tolA; cell envelope integrity inner membrane protein; K03646 colicin import membrane protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
TolA protein id=5095360 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
exported protein of unknown function
bjp_ig2599_scaffold_6805_12
RBG_13_RIF_OD1_07_36_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(9879..10172)
DNA (294bp) protein (98aa)
Tax=RBG_13_RIF_OD1_07_36_15_curated
bjp_ig2599_scaffold_6805_13
R_RIF_OD1_07_47_27, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(10328..10849)
DNA (522bp) protein (174aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_47_27_curated
bjp_ig2599_scaffold_6805_14
unknown

Not on your lists

comp(10854..11330)
DNA (477bp) protein (159aa)

This feature has no annotations

bjp_ig2599_scaffold_6805_15
RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(11413..11661)
DNA (249bp) protein (83aa)
Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKJ8_9BACT id=129970 bin=ACD7 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
putative endonuclease containing a URI domain Tax=RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated
hypothetical protein
bjp_ig2599_scaffold_6805_trna_2
unknown

Not on your lists

comp(11716..11802)
DNA (87bp)
transferRNA
bjp_ig2599_scaffold_6805_16
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(11764..12384)
DNA (621bp) protein (207aa)
phosphoribosyltransferase Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
ComF family protein id=4095023 bin=GWF2_CPR3_35_18 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWF2_CPR3_35_18 organism_group=CPR3
phosphoribosyltransferase
bjp_ig2599_scaffold_6805_17

Not on your lists

12426..13382
DNA (957bp) protein (319aa)
Type IV pilus biogenesis protein PilM {ECO:0000313|EMBL:KKR47842.1}; TaxID=1618815 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_143.;"
Type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM id=5803086 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
FtsA; heat shock protein 70
bjp_ig2599_scaffold_6805_18
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

13497..14087
DNA (591bp) protein (197aa)
transmembrane_regions Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
bjp_ig2599_scaffold_6805_19

Not on your lists

14090..14632
DNA (543bp) protein (181aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR47840.1}; TaxID=1618815 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_143.;"
bjp_ig2599_scaffold_6805_20
GWA1_OD1_47_11, Parcubacteria, Bacteria

Not on your lists

14637..14963
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU54990.1}; TaxID=1618792 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_47_11.;"
bjp_ig2599_scaffold_6805_21
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

14966..15985
DNA (1020bp) protein (340aa)
type II secretion system protein E Tax=GWB1_OD1_43_8
general secretion pathway protein E id=5803081 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
secretion system protein E
bjp_ig2599_scaffold_6805_22
RLO_OD1_41_13, Parcubacteria, Bacteria

Not on your lists

15939..16937
DNA (999bp) protein (333aa)
putative type II secretion system protein E Tax=RIFCSPLOWO2_12_FULL_OD1_41_13_curated
general secretion pathway protein E id=5803081 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type II secretion system protein E
Displaying 24 items

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