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bjp_ig3402_scaffold_4139

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig3402_scaffold_4139_1

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comp(125..517)
DNA (393bp) protein (131aa)
transmembrane_regions 7..24 id=87004 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Uncharacterized protein {ECO:0000313|EMBL:EKD56564.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
bjp_ig3402_scaffold_4139_2
unknown

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comp(790..1107)
DNA (318bp) protein (106aa)

This feature has no annotations

bjp_ig3402_scaffold_4139_3

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1171..1458
DNA (288bp) protein (96aa)
Marine sediment metagenome DNA, contig: S03H2_L03687 {ECO:0000313|EMBL:GAH44780.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
bjp_ig3402_scaffold_4139_4

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comp(1476..3362)
DNA (1887bp) protein (629aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP
Elongation factor 4 n=1 Tax=uncultured bacterium RepID=K2AIV3_9BACT rbh
lepA; ribosomal elongation factor, GTPase
bjp_ig3402_scaffold_4139_5

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3629..4609
DNA (981bp) protein (327aa)
sortase family protein n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174396F id=87198 bin=ACD58 species=candidate division TM7 single-cell isolate TM7a genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58 rbh
Sortase family protein {ECO:0000313|EMBL:EKD56307.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative sortase
bjp_ig3402_scaffold_4139_6

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4703..5380
DNA (678bp) protein (226aa)
membrane protein; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] id=87197 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:000025
hypothetical protein
bjp_ig3402_scaffold_4139_7

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comp(5397..6068)
DNA (672bp) protein (224aa)
seg 42..56 id=87196 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Uncharacterized protein {ECO:0000313|EMBL:EKD56309.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
bjp_ig3402_scaffold_4139_8
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

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comp(6074..7669)
DNA (1596bp) protein (532aa)
integral membrane protein MviN; K03980 virulence factor Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
Integral membrane protein MviN id=1263650 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
integral membrane protein MviN
bjp_ig3402_scaffold_4139_9

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comp(7677..8360)
DNA (684bp) protein (228aa)
transmembrane_regions 7..25 id=86247 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Uncharacterized protein {ECO:0000313|EMBL:EKD56948.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
bjp_ig3402_scaffold_4139_10
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

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comp(8420..9973)
DNA (1554bp) protein (518aa)
Glutamyl/glutaminyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=uncultured bacterium RepID=K1YUS0_9BACT
bjp_ig3402_scaffold_4139_11

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comp(10188..10733)
DNA (546bp) protein (182aa)
PaaX family transcriptional regulator; K02616 phenylacetic acid degradation operon negative regulatory protein id=86257 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Uncharacterized protein {ECO:0000313|EMBL:EKD56945.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
paaX; phenylacetic acid degradation operon transcriptional regulator, paaX family
bjp_ig3402_scaffold_4139_12
RBG_19FT_COMBO_OP11_43_10_curated, Microgenomates, Bacteria

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comp(11051..12211)
DNA (1161bp) protein (387aa)
hypothetical protein Tax=RBG_19FT_COMBO_OP11_43_10_curated
bjp_ig3402_scaffold_4139_13

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comp(12294..12653)
DNA (360bp) protein (120aa)
hypothetical protein; K07460 putative endonuclease id=86275 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
UPF0102 protein ACD_58C00039G0004 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
bjp_ig3402_scaffold_4139_14

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comp(12734..13255)
DNA (522bp) protein (174aa)
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 id=86276 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
50S ribosomal protein L19 {ECO:0000256|RuleBase:RU000559}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplS; 50S ribosomal protein L19
bjp_ig3402_scaffold_4139_15

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comp(13259..13549)
DNA (291bp) protein (97aa)
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 id=86274 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ribosomal protein L27
bjp_ig3402_scaffold_4139_16
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

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14033..17485
DNA (3453bp) protein (1151aa)
DNA polymerase III catalytic subunit, DnaE type; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
dnaE; DNA polymerase III DnaE (EC:2.7.7.7)
DNA polymerase III catalytic subunit, DnaE type id=3060394 bin=GWC2_CPR2_39_35 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC2_CPR2_39_35 organism_group=CPR2 organism_desc=Candidate for curation rbh
bjp_ig3402_scaffold_4139_17
unknown

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comp(17419..17595)
DNA (177bp) protein (59aa)

This feature has no annotations

Displaying 17 items

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