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bjp_ig3402_scaffold_2946

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig3402_scaffold_2946_1
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

comp(3..1622)
DNA (1620bp) protein (540aa)
Type II secretion system protein E {ECO:0000313|EMBL:KKT20615.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
general secretion pathway protein E id=5803081 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type II secretion system protein E
bjp_ig3402_scaffold_2946_2
GWA1_OD1_47_11, Parcubacteria, Bacteria

Not on your lists

comp(1625..1951)
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU54990.1}; TaxID=1618792 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_47_11.;"
bjp_ig3402_scaffold_2946_3

Not on your lists

comp(1956..2498)
DNA (543bp) protein (181aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR47840.1}; TaxID=1618815 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_143.;"
bjp_ig3402_scaffold_2946_4
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(2501..3091)
DNA (591bp) protein (197aa)
transmembrane_regions Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
bjp_ig3402_scaffold_2946_5
Parcubacteria bacterium GW2011_GWD2_40_9, Parcubacteria, Bacteria

Not on your lists

comp(3093..4193)
DNA (1101bp) protein (367aa)
Type IV pilus biogenesis protein PilM {ECO:0000313|EMBL:KKR80553.1}; TaxID=1618943 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWD2_40_9.;"
Type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM id=5803086 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
FtsA; heat shock protein 70
bjp_ig3402_scaffold_2946_6
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

4235..4852
DNA (618bp) protein (206aa)
phosphoribosyltransferase Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
ComF family protein id=4095023 bin=GWF2_CPR3_35_18 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWF2_CPR3_35_18 organism_group=CPR3
phosphoribosyltransferase
bjp_ig3402_scaffold_2946_trna_1
unknown

Not on your lists

4875..4961
DNA (87bp)
transferRNA
bjp_ig3402_scaffold_2946_7
unknown

Not on your lists

5347..5823
DNA (477bp) protein (159aa)

This feature has no annotations

bjp_ig3402_scaffold_2946_8
R_RIF_OD1_07_47_27, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

5828..6349
DNA (522bp) protein (174aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_47_27_curated
bjp_ig3402_scaffold_2946_9
RBG_13_RIF_OD1_07_36_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

6505..6798
DNA (294bp) protein (98aa)
Tax=RBG_13_RIF_OD1_07_36_15_curated
bjp_ig3402_scaffold_2946_10
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

6782..7504
DNA (723bp) protein (241aa)
tolA; cell envelope integrity inner membrane protein; K03646 colicin import membrane protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
TolA protein id=5095360 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
exported protein of unknown function
bjp_ig3402_scaffold_2946_11
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

7494..9644
DNA (2151bp) protein (717aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-); K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] id=5803096 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
ATP-dependent DNA helicase RecG Tax=GWB1_OD1_43_8
ATP-dependent DNA helicase RecG
bjp_ig3402_scaffold_2946_12
unknown

Not on your lists

comp(9707..10033)
DNA (327bp) protein (109aa)

This feature has no annotations

bjp_ig3402_scaffold_2946_13
unknown

Not on your lists

comp(10061..10318)
DNA (258bp) protein (86aa)

This feature has no annotations

bjp_ig3402_scaffold_2946_trna_2
unknown

Not on your lists

comp(10261..10332)
DNA (72bp)
transferRNA
bjp_ig3402_scaffold_2946_14
R_OD1_Giovannonibacteria_43_16, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(10323..10586)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A4N2_9BACT
putative endonuclease containing a URI domain Tax=RIFCSPHIGHO2_02_OD1_Giovannonibacteria_43_16_curated
putative endonuclease containing a URI domain
bjp_ig3402_scaffold_2946_15

Not on your lists

comp(10692..10868)
DNA (177bp) protein (59aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000313|EMBL:KKR47477.1}; TaxID=1618815 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_143.;"
bjp_ig3402_scaffold_2946_16
GWF2_OD1_40_10, Parcubacteria, Bacteria

Not on your lists

comp(10852..12483)
DNA (1632bp) protein (544aa)
ftsH; cell division protein FtsH; K03798 cell division protease FtsH [EC:3.4.24.-] id=5803103 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ATP-dependent zinc metalloprotease FtsH Tax=GWF2_OD1_40_10
ftsH; cell division protein FtsH
bjp_ig3402_scaffold_2946_17
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(12588..13268)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037C730D
hypothetical protein; K07491 putative transposase Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
hypothetical protein
bjp_ig3402_scaffold_2946_18
GWB1_OD1_41_6_partial, Parcubacteria, Bacteria

Not on your lists

13612..14067
DNA (456bp) protein (152aa)
SsrA-binding protein Tax=GWB1_OD1_41_6_partial
SsrA-binding protein id=2965886 bin=GWA1_ZB2_49_26 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
smpB; SsrA-binding protein
bjp_ig3402_scaffold_2946_19
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

14478..14921
DNA (444bp) protein (148aa)
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
translation initiation factor IF-3; K02520 translation initiation factor IF-3 id=5803010 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
infC; protein InfC
bjp_ig3402_scaffold_2946_20
R_OD1_39_11, Parcubacteria, Bacteria

Not on your lists


15151..15414
DNA (264bp) protein (88aa)
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 Tax=RIFCSPLOWO2_01_FULL_OD1_39_11_curated
50S ribosomal protein L20 id=4731750 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
rplT; 50S ribosomal protein L20
bjp_ig3402_scaffold_2946_21
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists

comp(15396..16688)
DNA (1293bp) protein (431aa)
UvrD/REP helicase family protein Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
UvrD/REP helicase family protein id=5802117 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds) rbh
UvrD/REP helicase family protein
Displaying 23 items

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