ggKbase home page

bjp_ig3402_scaffold_5889

Search features with annotation key words

Displaying 23 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig3402_scaffold_5889_1
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1036)
DNA (1035bp) protein (345aa)
DNA modification methylase (EC:2.1.1.72) Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
DNA modification methylase (EC:2.1.1.72)
DNA modification methylase id=3688786 bin=GWC2_Planctomycetes_45_44 species=Anabaena sp. 90 genus=Anabaena taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
bjp_ig3402_scaffold_5889_2
R_RIF_OD1_01_42_19, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(1020..1286)
DNA (267bp) protein (89aa)
putative type II DNA modification methylase Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_01_42_19_curated
Putative type II DNA modification methylase id=3438923 bin=GWA2_CPR4_42_17 species=Capnocytophaga sp. oral taxon 380 genus=Capnocytophaga taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
bjp_ig3402_scaffold_5889_3
Parcubacteria bacterium GW2011_GWE2_40_8, Parcubacteria, Bacteria

Not on your lists

comp(1343..1681)
DNA (339bp) protein (113aa)
Putative rRNA maturation factor {ECO:0000313|EMBL:KKR76797.1}; TaxID=1618951 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWE2_40_8.;"
hypothetical protein; K07042 probable rRNA maturation factor id=5803490 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
bjp_ig3402_scaffold_5889_4
RHI_OD1_Moranbacteria_40_10, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1804..2037)
DNA (234bp) protein (78aa)
Uncharacterized protein Tax=RIFCSPHIGHO2_12_FULL_OD1_Moranbacteria_40_10_curated
Ribosomal_S21 2..37 id=8891 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
bjp_ig3402_scaffold_5889_5

Not on your lists


comp(2090..3406)
DNA (1317bp) protein (439aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00036B65C8
Histidine-tRNA ligase {ECO:0000313|EMBL:KKR47596.1}; TaxID=1618815 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_143.;"
bjp_ig3402_scaffold_5889_6
Parcubacteria bacterium GW2011_GWB2_40_8, Parcubacteria, Bacteria

Not on your lists

comp(3403..3894)
DNA (492bp) protein (164aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] id=5803493 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000313|EMBL:KKR75447.1}; TaxID=1618890 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB2_40_8.;"
bjp_ig3402_scaffold_5889_7

Not on your lists

4027..4509
DNA (483bp) protein (161aa)
Aminoacyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] id=5803533 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000313|EMBL:KKR60152.1}; TaxID=1618924 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_40_31.;"
bjp_ig3402_scaffold_5889_8
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists


comp(4506..5540)
DNA (1035bp) protein (345aa)
RNA binding S1 domain protein Tax=GWB1_OD1_43_8
RNA binding S1 domain-containing protein; K02945 small subunit ribosomal protein S1 id=5803531 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
30S ribosomal protein S1
bjp_ig3402_scaffold_5889_9

Not on your lists

5605..6378
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI00036DD77F
Uncharacterized protein {ECO:0000313|EMBL:CEG11519.1}; TaxID=717931 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="groundwater metagenome.;"
DNA modification methylase
bjp_ig3402_scaffold_5889_10
CG_Elusi_02, Elusimicrobia, Bacteria

Not on your lists

6366..7040
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI0003821C59
DNA methylase N-4/N-6 domain-containing protein Tax=CG_Elusi_02
hypothetical protein
bjp_ig3402_scaffold_5889_11

Not on your lists

7092..7631
DNA (540bp) protein (180aa)
Marine sediment metagenome DNA, contig: S01H1_L01892 {ECO:0000313|EMBL:GAF85486.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
bjp_ig3402_scaffold_5889_12
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

7708..8307
DNA (600bp) protein (200aa)
Zn-dependent hydrolase of the beta-lactamase fold-like protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
id=5803530 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
beta-lactamase fold-like Zn-dependent hydrolase
bjp_ig3402_scaffold_5889_13
Parcubacteria bacterium GW2011_GWD2_40_9, Parcubacteria, Bacteria

Not on your lists

8298..8537
DNA (240bp) protein (80aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR82317.1}; TaxID=1618943 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWD2_40_9.;"
bjp_ig3402_scaffold_5889_14
unknown

Not on your lists

comp(10218..10460)
DNA (243bp) protein (81aa)

This feature has no annotations

bjp_ig3402_scaffold_5889_15
RBG_13_RIF_OD1_07_36_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

10763..11602
DNA (840bp) protein (280aa)
DNA modification methylase Tax=RBG_13_RIF_OD1_07_36_15_curated
DNA modification methylase id=4790067 bin=GWC2_OD1_43_27 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete) rbh
DNA modification methylase
bjp_ig3402_scaffold_5889_16
GWB1_OD1_42_72_partial, Azambacteria, Parcubacteria, Bacteria

Not on your lists

11604..12656
DNA (1053bp) protein (351aa)
Putative uncharacterized protein id=4790068 bin=GWC2_OD1_43_27 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete) rbh
Uncharacterized protein {ECO:0000313|EMBL:KKS73864.1}; TaxID=1618616 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWB1_42_72.;"
hypothetical protein
bjp_ig3402_scaffold_5889_17
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

12726..13256
DNA (531bp) protein (177aa)
type 11 methyltransferase Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
type 11 methyltransferase id=5803526 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
methylase involved in ubiquinone/menaquinone biosynthesis
bjp_ig3402_scaffold_5889_18
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

13253..14554
DNA (1302bp) protein (434aa)
Extracellular solute-binding protein, family 1 {ECO:0000313|EMBL:KKT20854.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
transmembrane_regions id=5803525 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
family 1 extracellular solute-binding protein
bjp_ig3402_scaffold_5889_19

Not on your lists

14555..14902
DNA (348bp) protein (116aa)
Putative uncharacterized protein id=3736484 bin=GWC2_OD1_43_27 species=unknown genus=Verticillium taxon_order=Hypocreales taxon_class=Sordariomycetes phylum=Ascomycota tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Uncharacterized protein {ECO:0000313|EMBL:KKT16848.1}; TaxID=1618911 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_43_61.;"
bjp_ig3402_scaffold_5889_20
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

14908..15273
DNA (366bp) protein (122aa)
transmembrane_regions Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
transmembrane_regions id=5803523 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
bjp_ig3402_scaffold_5889_21
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

Not on your lists

15318..15665
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7Q061_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKS70585.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
bjp_ig3402_scaffold_5889_22
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

15708..15950
DNA (243bp) protein (81aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT20850.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
transmembrane_regions id=5227144 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
bjp_ig3402_scaffold_5889_23
unknown

Not on your lists

comp(15992..16372)
DNA (381bp) protein (127aa)

This feature has no annotations

Displaying 23 items

View Taxonomy