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ACD49_16

Alias: ACD49_15593.19261.21

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD49_16_1
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(2..538)
DNA (537bp) protein (179aa)
uvrC; excinuclease ABC subunit C
UvrC_HhH_N (db=HMMPfam db_id=PF08459 from=83 to=170 evalue=1.1e-21 interpro_id=IPR001162 interpro_description=Excinuclease ABC, C subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: nuclease activity (GO:0004518), Biological Process: nucleotide-excision repair (GO:0006289))
UVRC_2 (db=ProfileScan db_id=PS50165 from=46 to=165 evalue=16.292 interpro_id=IPR001162 interpro_description=Excinuclease ABC, C subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: nuclease activity (GO:0004518), Biological Process: nucleotide-excision repair (GO:0006289))
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C alias=ACD49_15593.19261.21G0001,ACD49_15593.19261.21_1,ACD49_C00016G00001 id=69539 tax=ACD49 species=Methanococcus vannielii genus=Methanococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota organism_group=BD1-5 organism_desc=BD1-5
ACD49_16_2
ACD49, Gracilibacteria, Bacteria

Not on your lists

1767..2882
DNA (1116bp) protein (372aa)
nucleic acid methylase
seg (db=Seg db_id=seg from=109 to=123)
UPF0020 (db=HMMPfam db_id=PF01170 from=161 to=364 evalue=3.3e-32 interpro_id=IPR000241 interpro_description=Putative RNA methylase)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=138 to=368 evalue=2.3e-22)
ACD49_16_3
ACD49, Gracilibacteria, Bacteria

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3032..3172
DNA (141bp) protein (47aa)
3032..3172 + (rbs_motif=TTAA rbs_spacer=11bp)
hypothetical protein Tax=ACD49
ACD49_16_4
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(3207..3620)
DNA (414bp) protein (138aa)
hypothetical protein
seg (db=Seg db_id=seg from=19 to=33)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=33)
Endonuc_Holl (db=HMMPfam db_id=PF10107 from=39 to=136 evalue=4.3e-25 interpro_id=IPR019287 interpro_description=Holliday junction resolvase-like)
ACD49_16_5
ACD49, Gracilibacteria, Bacteria

Not on your lists

3688..4368
DNA (681bp) protein (227aa)
seg (db=Seg db_id=seg from=212 to=225)
seg 212..225 Tax=ACD49
ACD49_16_6
unknown

Not on your lists

comp(4509..5486)
DNA (978bp) protein (326aa)
priA; primosomal protein N'
Primosomal protein N' n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SDC1_ACIJO (db=UNIREF evalue=4.0e-29 bit_score=132.0 identity=30.49 coverage=71.4723926380368)
seg (db=Seg db_id=seg from=1 to=13)
seg (db=Seg db_id=seg from=134 to=165)
ACD49_16_7

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comp(5473..5919)
DNA (447bp) protein (149aa)
hypothetical protein
TIGR00244: transcriptional regulator NrdR (db=HMMTigr db_id=TIGR00244 from=1 to=146 evalue=2.8e-41 interpro_id=IPR003796 interpro_description=Ribonucleotide reductase regulator NrdR-like)
ATP-cone (db=HMMPfam db_id=PF03477 from=51 to=134 evalue=1.6e-07 interpro_id=IPR005144 interpro_description=ATP-cone)
ATP_CONE (db=ProfileScan db_id=PS51161 from=49 to=138 evalue=13.423 interpro_id=IPR005144 interpro_description=ATP-cone)
ACD49_16_8
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(5980..6909)
DNA (930bp) protein (310aa)
RNA methylase, NOL1/NOP2/sun family
NOL1_NOP2_SUN (db=PatternScan db_id=PS01153 from=178 to=189 evalue=0.0 interpro_id=IPR018314 interpro_description=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: methyltransferase activity (GO:0008168))
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=4 to=309 evalue=6.6e-45)
NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING (db=HMMPanther db_id=PTHR22807 from=72 to=309 evalue=2.1e-42)
ACD49_16_9
unknown

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comp(6983..7327)
DNA (345bp) protein (115aa)
50S ribosomal protein L20
50S ribosomal protein L20 n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTI0_9FIRM (db=UNIREF evalue=2.0e-24 bit_score=114.0 identity=50.0 coverage=98.2608695652174)
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=1 to=114 evalue=1.5e-43 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal_L20 (db=HMMPfam db_id=PF00453 from=2 to=109 evalue=2.9e-37 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD49_16_10

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comp(7366..7563)
DNA (198bp) protein (66aa)
L35p-like (db=superfamily db_id=SSF143034 from=1 to=64 evalue=1.6e-12)
Ribosomal_L35p (db=HMMPfam db_id=PF01632 from=2 to=43 evalue=6.3e-09 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMALL35 (db=FPrintScan db_id=PR00064 from=2 to=19 evalue=2.5e-05 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMALL35 (db=FPrintScan db_id=PR00064 from=20 to=34 evalue=2.5e-05 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD49_16_11

Not on your lists

comp(7596..8111)
DNA (516bp) protein (172aa)
translation initiation factor IF-3
infC: translation initiation factor IF-3 (db=HMMTigr db_id=TIGR00168 from=8 to=171 evalue=1.3e-25 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
TRANSLATION INITIATION FACTOR IF-3 (db=HMMPanther db_id=PTHR10938 from=23 to=171 evalue=6.2e-22 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
IF3_N (db=HMMPfam db_id=PF05198 from=4 to=79 evalue=7.7e-18 interpro_id=IPR019814 interpro_description=Translation initiation factor 3, N-terminal GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
ACD49_16_12
ACD49, Gracilibacteria, Bacteria

Not on your lists


comp(8115..8387)
DNA (273bp) protein (91aa)
seg (db=Seg db_id=seg from=73 to=84)
Ribosomal_S20p (db=HMMPfam db_id=PF01649 from=2 to=82 evalue=8.8e-17 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S20 (db=superfamily db_id=SSF46992 from=3 to=86 evalue=1.5e-16 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S20: ribosomal protein S20 (db=HMMTigr db_id=TIGR00029 from=1 to=87 evalue=3.4e-15 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD49_16_13
ACD49, Gracilibacteria, Bacteria

Not on your lists

8622..9815
DNA (1194bp) protein (398aa)
coiled-coil (db=Coil db_id=coil from=313 to=334 evalue=NA)
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=46 to=277 evalue=2.6e-06)
coiled-coil 313..334 Tax=ACD49
ACD49_16_14
ACD49, Gracilibacteria, Bacteria

Not on your lists

10212..10901
DNA (690bp) protein (230aa)
10212..10901 + (rbs_motif=TTTA rbs_spacer=12bp)
hypothetical protein Tax=ACD49
ACD49_16_15

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11041..11865
DNA (825bp) protein (275aa)
ATP synthase subunit a n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSC2_9BACT (db=UNIREF evalue=5.0e-15 bit_score=85.1 identity=32.21 coverage=67.6363636363636)
ATP synthase F0 subunit A; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] (db=KEGG evalue=2.0e-13 bit_score=79.7 identity=34.25 coverage=46.5454545454545)
transmembrane_regions (db=TMHMM db_id=tmhmm from=141 to=163)
transmembrane_regions (db=TMHMM db_id=tmhmm from=207 to=229)
ACD49_16_16
ACD49, Gracilibacteria, Bacteria

Not on your lists

11938..12156
DNA (219bp) protein (73aa)
atpE; ATP synthase subunit c
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
transmembrane_regions (db=TMHMM db_id=tmhmm from=11 to=33)
ATPASE_C (db=PatternScan db_id=PS00605 from=34 to=55 evalue=0.0 interpro_id=IPR020537 interpro_description=ATPase, F0 complex, subunit C, DCCD-binding site)
ACD49_16_17
ACD49, Gracilibacteria, Bacteria

Not on your lists

12318..12794
DNA (477bp) protein (159aa)
seg (db=Seg db_id=seg from=10 to=30)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
coiled-coil (db=Coil db_id=coil from=61 to=82 evalue=NA)
ATP-synt_B (db=HMMPfam db_id=PF00430 from=10 to=138 evalue=7.1e-11 interpro_id=IPR002146 interpro_description=ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO=Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263))
ACD49_16_18
ACD49, Gracilibacteria, Bacteria

Not on your lists

12815..13162
DNA (348bp) protein (116aa)
12815..13162 + (rbs_motif=TTTAA rbs_spacer=9bp)
hypothetical protein Tax=ACD49
ACD49_16_19
ACD49, Gracilibacteria, Bacteria

Not on your lists

13278..14783
DNA (1506bp) protein (502aa)
ATP synthase subunit alpha n=1 Tax=Nitratiruptor sp. SB155-2 RepID=ATPA_NITSB (db=UNIREF evalue=2.0e-172 bit_score=609.0 identity=59.76 coverage=96.4143426294821)
atpA; F0F1 ATP synthase subunit alpha (EC:3.6.3.14)
atpA; F0F1 ATP synthase subunit alpha (EC:3.6.3.14)
ATPASE_ALPHA_BETA (db=PatternScan db_id=PS00152 from=357 to=366 evalue=0.0 interpro_id=IPR020003 interpro_description=ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO=Molecular Function: ATP binding (GO:0005524))
ACD49_16_20
ACD49, Gracilibacteria, Bacteria

Not on your lists

14944..15843
DNA (900bp) protein (300aa)
F0F1 ATP synthase subunit gamma (EC:3.6.3.14)
ATP-synt (db=HMMPfam db_id=PF00231 from=2 to=296 evalue=9.2e-76 interpro_id=IPR000131 interpro_description=ATPase, F1 complex, gamma subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961))
ATPsyn_F1gamma: ATP synthase F1, gamma (db=HMMTigr db_id=TIGR01146 from=1 to=297 evalue=1.3e-70 interpro_id=IPR000131 interpro_description=ATPase, F1 complex, gamma subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activity, rotati
ATP synthase (F1-ATPase), gamma subunit (db=superfamily db_id=SSF52943 from=5 to=298 evalue=6.2e-67 interpro_id=IPR000131 interpro_description=ATPase, F1 complex, gamma subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activity, ro
ACD49_16_21
ACD49, Gracilibacteria, Bacteria

Not on your lists

15896..16357
DNA (462bp) protein (154aa)
ribonuclease H
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=1 to=128 evalue=5.7e-22 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=3 to=130 evalue=6.0e-12)
RnaseH (db=HMMPfam db_id=PF00075 from=4 to=128 evalue=1.2e-09 interpro_id=IPR002156 interpro_description=Ribonuclease H GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: ribonuclease H activity (GO:0004523))
ACD49_16_22
ACD49, Gracilibacteria, Bacteria

Not on your lists

16376..17770
DNA (1395bp) protein (465aa)
ATP synthase F1 subcomplex beta subunit n=3 Tax=Clostridiales RepID=D4MUP5_9FIRM (db=UNIREF evalue=2.0e-176 bit_score=622.0 identity=66.97 coverage=95.2688172043011)
hypothetical protein
hypothetical protein
seg (db=Seg db_id=seg from=3 to=14)
ACD49_16_23
ACD49, Gracilibacteria, Bacteria

Not on your lists

17907..18317
DNA (411bp) protein (137aa)
seg (db=Seg db_id=seg from=88 to=105)
coiled-coil (db=Coil db_id=coil from=88 to=109 evalue=NA)
ATP SYNTHASE DELTA/EPSILON CHAIN (db=HMMPanther db_id=PTHR13822 from=1 to=129 evalue=7.2e-16 interpro_id=IPR001469 interpro_description=ATPase, F1 complex, delta/epsilon subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activity, r
ATP-synt_DE_N (db=HMMPfam db_id=PF02823 from=1 to=78 evalue=1.5e-13 interpro_id=IPR020546 interpro_description=ATPase, F1 complex, delta/epsilon subunit, N-terminal GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activity, rotational mec
ACD49_16_24
ACD49, Gracilibacteria, Bacteria

Not on your lists

18390..18977
DNA (588bp) protein (196aa)
coiled-coil (db=Coil db_id=coil from=35 to=56 evalue=NA)
coiled-coil 35..56 Tax=ACD49
ACD49_16_25
ACD49, Gracilibacteria, Bacteria

Not on your lists

19051..19299
DNA (249bp) protein (83aa)
seg (db=Seg db_id=seg from=24 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
Pili subunits (db=superfamily db_id=SSF54523 from=19 to=77 evalue=6.1e-16)
no description (db=Gene3D db_id=G3DSA:3.30.700.10 from=18 to=77 evalue=0.00038)
Displaying 25 items

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